View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_high_1 (Length: 552)
Name: NF6782_high_1
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 144 - 353
Target Start/End: Complemental strand, 52002609 - 52002408
Alignment:
| Q |
144 |
tcatcagcaatcgaactttgtttttcgtccttaaccaagtattataagcatattccatatgtcacttcttttcgtctgtgttgaagatttagataagcaa |
243 |
Q |
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| T |
52002609 |
tcatcagcaattgaactttgtttttcgtccttaaccaagtattataagcatattgcatacgtctcttcttttcatttggtttgaagat------aagcaa |
52002516 |
T |
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| Q |
244 |
atgcctaagaaagaatattcacttatgatgttggagcaggaacttgtaattatatattagagactgtgagaattatttccattgcactatctcctgttac |
343 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
52002515 |
atgcctaagaaagaattttcacatatgatgttggagcaggaccttgtaatt--atattagagacagtgagaattattgccattgcactatctcctgttac |
52002418 |
T |
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| Q |
344 |
tccgatcttg |
353 |
Q |
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||||| |||| |
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| T |
52002417 |
tccgagcttg |
52002408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 144 - 353
Target Start/End: Complemental strand, 5174806 - 5174605
Alignment:
| Q |
144 |
tcatcagcaatcgaactttgtttttcgtccttaaccaagtattataagcatattccatatgtcacttcttttcgtctgtgttgaagatttagataagcaa |
243 |
Q |
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||||||||||| ||| |||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||| |
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| T |
5174806 |
tcatcagcaattgaagtttgtttttcatccttaaccaaatataataagcatattccatatctcacttcttttcgtttgtgttgaagat------aagcaa |
5174713 |
T |
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| Q |
244 |
atgcctaagaaagaatattcacttatgatgttggagcaggaacttgtaattatatattagagactgtgagaattatttccattgcactatctcctgttac |
343 |
Q |
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|||||||| ||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
5174712 |
atgcctaataaagaattttcacttatgatcttggagcaggaccttgtaatt--atattagagacagtgagaattattgccattgcactatcgcctgttac |
5174615 |
T |
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| Q |
344 |
tccgatcttg |
353 |
Q |
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||||| |||| |
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| T |
5174614 |
tccgagcttg |
5174605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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