View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_high_5 (Length: 400)
Name: NF6782_high_5
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 2226634 - 2226861
Alignment:
| Q |
2 |
ctcaagcaataaaatgtcgtaattgttatgtcgaagtcgaactatgtgattggggttggaactcccaatctctcca-tttttatttggaaaaggccaaac |
100 |
Q |
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| T |
2226634 |
ctcaagcaataaaatgtcaaaattgttatgtcaaagtcgaatgacgtgattgaggttggaagtcccaatctctccactttttatttggaaaaggccaaac |
2226733 |
T |
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| Q |
101 |
aaacaagatatattaaaaattacattaatgctatttaacgtgagggtaatcattcgtgaaaccaacaaatggttaggtgcttaaacttggatggttctga |
200 |
Q |
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| T |
2226734 |
aaacaagatatattaaaaattacattaatgctatttaacgtgagggtaatcgttcgtgaaaccaacaaatggt----------------------tctga |
2226811 |
T |
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| Q |
201 |
cttccaatttttgtggaataaagccgtggtagtggtatgaaagttggtca |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2226812 |
cttccaatttttgtggaataaagccgtggtagtggtatgaaagttggtca |
2226861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 2227014 - 2227108
Alignment:
| Q |
305 |
taccgcgaactcaaagacaaccaaatggattaactcaccaatgattaaagtcatgctttttaagattttaatctttgatttaatctaacaccaaac |
400 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2227014 |
taccacgaactcaa-gacaaccaaatggattaactcaccaatgattcaagtcatgctttttaagattttaatctttgatttaatccaacaccaaac |
2227108 |
T |
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