View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_high_8 (Length: 380)
Name: NF6782_high_8
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 42413305 - 42413652
Alignment:
| Q |
19 |
gttaagaatccttcataaccaatgccatcaagatcaattgctgttactctactagaagagttgtccaatggtaaatcacataatattccaagaaattgtg |
118 |
Q |
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| T |
42413305 |
gttaagaatccttcataaccaatgccatcaagatcaattgctgttactctactagaagagttgtccaatggtaaatcacataatattccaagaaattgtg |
42413404 |
T |
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| Q |
119 |
agccagtgctatgacatggatcaactgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaag |
218 |
Q |
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| T |
42413405 |
agccagtgctatgacatggatcaactgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaag |
42413504 |
T |
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| Q |
219 |
ggagtgaatgtcattttcatgagttaatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggtgagaagaatgagaatttagta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42413505 |
ggagtgaatgtcattttcatgagttaatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggcgagaagaatgagaatttagta |
42413604 |
T |
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| Q |
319 |
ggtgnnnnnnnagccattgtggaaattggttttggttttaatttgtga |
366 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42413605 |
ggtgtttttttagccattgtggaaattggttttggttttaatttgtga |
42413652 |
T |
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