View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_low_10 (Length: 382)
Name: NF6782_low_10
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 180 - 376
Target Start/End: Complemental strand, 28151991 - 28151795
Alignment:
| Q |
180 |
atttgtttacaatatatcaaagttaaactttaatttatgacaataaatctcaccagataaagtataatacatccccttttgaaggtgaatcttttgggag |
279 |
Q |
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| T |
28151991 |
atttgtttacaatatatcaaagttaaactttaatttatgacaataaatctcaccagataaagtataatacatccccttttgaaggtgaatcttttgggag |
28151892 |
T |
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| Q |
280 |
acactatcatatggttgatttctgctatgagctaccacatatttgttacctaatgattctctatgttgtatttttgcttccccaaatgatgtccatc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28151891 |
acactatcatatggttgatttctgctatgagctaccacatatttgttacctaatgattctctatgttgtatttttgattccccaaatgatgtccatc |
28151795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 28152412 - 28152251
Alignment:
| Q |
19 |
ttagattcagcaaaaatgacaccacaaaatttaaatccttcatttgttttgactactgctgttacaggaacatttccattactcacttgtaaccaagctg |
118 |
Q |
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| T |
28152412 |
ttagattccgcaaaaatgacaccacaaaatttaaatccttcatttgttttaactactgctgttacaggaacatttccattactcacttgtaaccaagctg |
28152313 |
T |
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| Q |
119 |
cacaattcaaaagcgtttgattttattcataactacctataactataaattagtgcatatta |
180 |
Q |
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| T |
28152312 |
cacaattcaaaagcgtttgattttattcataactacctataactataaattagtgcatatta |
28152251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 376
Target Start/End: Original strand, 8024848 - 8024962
Alignment:
| Q |
262 |
aggtgaatcttttgggagacactatcatatggttgatttctgctatgagctaccacatatttgttacctaatgattctctatgttgtatttttgcttccc |
361 |
Q |
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|||| ||||||||| ||||||||||||| |||||||||||| ||||| | ||||||| ||||||| |||||||||| |||||||| ||| |||| |||| |
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| T |
8024848 |
aggtaaatcttttgtgagacactatcatgtggttgatttctactatgtgttaccacaaatttgttgcctaatgattttctatgttcaattattgcatccc |
8024947 |
T |
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| Q |
362 |
caaatgatgtccatc |
376 |
Q |
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|||||| |||||||| |
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| T |
8024948 |
caaatgttgtccatc |
8024962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 8024250 - 8024359
Alignment:
| Q |
16 |
caattagattcagcaaaaatgacaccacaaaatttaaatccttcatttgttttgactactgctgttacaggaacatttccattactcacttgtaaccaag |
115 |
Q |
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||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||| || | | ||||||||||| ||||| |
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| T |
8024250 |
caattaggctcagcaaaaatagcaccaccaaatttaaatcctttggttgttttgactactgctgtgacaggaacagtttcctcactcacttgtatccaag |
8024349 |
T |
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| Q |
116 |
ctgcacaatt |
125 |
Q |
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||||| |||| |
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| T |
8024350 |
ctgcataatt |
8024359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 376
Target Start/End: Original strand, 21546003 - 21546100
Alignment:
| Q |
279 |
gacactatcatatggttgatttctgctatgagctaccacatatttgttacctaatgattctctatgttgtatttttgcttccccaaatgatgtccatc |
376 |
Q |
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||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |||| |||| | |||||||| |||||||| |
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| T |
21546003 |
gacactatcatgtggttgatttctgttattggctaccacatatttgttacccaatgattctctatgttctattcttgcattcccaaatgctgtccatc |
21546100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 21544671 - 21544771
Alignment:
| Q |
25 |
tcagcaaaaatgacaccacaaaatttaaatccttcatttgttttgactactgctgttacaggaacatttccattactcacttgtaaccaagctgcacaat |
124 |
Q |
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|||||| ||||| |||||| |||||||||||||||| |||||||||| | ||||||||| | ||||| | | ||||||||||| |||||||||| ||| |
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| T |
21544671 |
tcagcataaatggcaccaccaaatttaaatccttcagttgttttgaccattgctgttaccaggacattcgcctcactcacttgtatccaagctgcataat |
21544770 |
T |
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| Q |
125 |
t |
125 |
Q |
| |
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| |
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| T |
21544771 |
t |
21544771 |
T |
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