View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_low_12 (Length: 373)
Name: NF6782_low_12
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 27429111 - 27429474
Alignment:
| Q |
6 |
agatgatacctcatttcaatgtatcgactcaaataacactttcaaacatttacaacccaaaaag--------agatgctttattttctctctttatatat |
97 |
Q |
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| T |
27429111 |
agatgatacctcatttcaatgtatcgactcaaataacactttcaaacattgacaacccaaaaagttaaatagagatgctttattttctctctttatatat |
27429210 |
T |
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| Q |
98 |
aaaggtaagtaatcattattcatgaggatcaggagtgtgtggccattgtattttgaatgctgtaaataggatatatctcacaacattcacaaattaacta |
197 |
Q |
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| T |
27429211 |
aaaggtaagtaatcattattcatgaggatcaggagtgtgtggccattgtattttgaatgctgtaaataggatatatctcacaacattcacaaattaacta |
27429310 |
T |
|
| Q |
198 |
tctccatcaactttttgcttattgcactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacattaatacagacacctttg |
297 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27429311 |
tctccatcaactttttgcttattggactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacattaatacagacacccttg |
27429410 |
T |
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| Q |
298 |
ttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27429411 |
ttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatg |
27429474 |
T |
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