View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_low_13 (Length: 348)
Name: NF6782_low_13
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 15029246 - 15029574
Alignment:
| Q |
20 |
atgtacacttccaacaacggattttcatctaaagatcagaaatttattaatgctgtggagccattgctgttacagaataaggcaagaacatcgctcctca |
119 |
Q |
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| T |
15029246 |
atgtacacttccaacaacggattttcatctaaagatcagaaatttattaacgctgtggagccattgctgttacagaataaggcaagaacatcactcctta |
15029345 |
T |
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| Q |
120 |
gaactcggttacttacagttccttgtataagaagctaacttatgtacattgtgaacatgaaacaggttgacttggttcttttcggccatgtgcataatta |
219 |
Q |
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| T |
15029346 |
gaactcggttacttacagttccttgtataagaagctaacttatgtacattgtgaacatgaaacaggttgacttggttcttttcggccatgtgcataatta |
15029445 |
T |
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| Q |
220 |
tgagagaacttgttctgtctatcagaataagtgcaaagccattcctataaaagatcaaaagggagtagacacatatgataacagaaattatagtgctcct |
319 |
Q |
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| T |
15029446 |
tgagagaacttgttctgtctatcagaataagtgcaaagccattcctataaaagatcaaaagggagtagacacatatgataacagaaattatagtgctcct |
15029545 |
T |
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| Q |
320 |
gtacatgctgtcattggcatggctggttt |
348 |
Q |
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| T |
15029546 |
gtacatgctgtcattggcatggccggttt |
15029574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 52 - 348
Target Start/End: Original strand, 21368657 - 21368951
Alignment:
| Q |
52 |
agatcagaaatttattaatgctgtggagccattgctgttacagaataaggcaagaacatc--gctcctcagaactcggttacttacagttccttgtataa |
149 |
Q |
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| T |
21368657 |
agatcagaagtttgttgaagctgtggagccgttgttgtttgagaataaggcaagaacatcaagctcgtt-gaacttagttacttacagttccttgtataa |
21368755 |
T |
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| Q |
150 |
gaagctaacttatgtacattgtgaacatgaaacaggttgacttggttcttttcggccatgtgcataattatgagagaacttgttctgtctatcagaataa |
249 |
Q |
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| T |
21368756 |
gtagctaacttgtgta--ttga-aacatgaaacaggttgacttggttcttttcggccatgttcataactatgagagaacttgttccgtttatcagaagaa |
21368852 |
T |
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| Q |
250 |
gtgcaaagccattcctataaaagatcaaaagggagtagacacatatgataacagaaattatagtgctcctgtacatgctgtcattggcatggctggttt |
348 |
Q |
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| T |
21368853 |
atgcaaagccatgcctataaaagatcaaaaaggaatagacacttatgataacagaaattatagtgctcctgtgcatgctatcattggcatggctggttt |
21368951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 35358186 - 35358118
Alignment:
| Q |
167 |
attgtgaacatgaaacaggttgacttggttcttttcggccatgtgcataattatgagagaacttgttct |
235 |
Q |
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| T |
35358186 |
attgtaaacatgaaacaggttgacttggttctttttggtcatgtgcatagatatgaaagaatttgttct |
35358118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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