View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_low_17 (Length: 270)
Name: NF6782_low_17
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 45479945 - 45479689
Alignment:
| Q |
1 |
tttgtcgtgcatacattcaacatttgtcctaagtttactgctttggaccctgaacttgccaaattgcggatcaatcttgctacctcttcctgcattatat |
100 |
Q |
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| T |
45479945 |
tttgtcgtgcatacattcaacatttgtcctaagtttactgctttggaccctgaacttgccaaattgcggatcaatcttgctacctcttcctgcattatat |
45479846 |
T |
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| Q |
101 |
gtgtattttttttaattcaaattgnnnnnnnnnnnnnaagtttgcaaacaactataattaattcatttacggatagcttttcttaaatagaaaaaa---- |
196 |
Q |
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| T |
45479845 |
gtgtattttatttttttttaa-----------------agtttgcaaacaactataattaattcatttacggatagcttttcttaaataaaaaaaaaaaa |
45479763 |
T |
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| Q |
197 |
tcatatataattatttttcgagcacaaaattgtactccaaaaagtctatattttattgcttaataattttaatt |
270 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45479762 |
tcatatataattatttgtcgagcacaaaattgtactccaaaaagtctatattttattgcttaataattttaatt |
45479689 |
T |
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