View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6782_low_2 (Length: 517)

Name: NF6782_low_2
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6782_low_2
NF6782_low_2
[»] chr4 (17 HSPs)
chr4 (1-438)||(5538667-5539104)
chr4 (1-497)||(5559372-5559868)
chr4 (47-438)||(5582734-5583128)
chr4 (396-497)||(5885659-5885760)
chr4 (83-339)||(3749397-3749653)
chr4 (35-497)||(5858461-5858923)
chr4 (161-335)||(5613629-5613803)
chr4 (8-179)||(5570789-5570960)
chr4 (101-335)||(5894702-5894936)
chr4 (396-497)||(5894552-5894653)
chr4 (47-271)||(5553618-5553842)
chr4 (101-223)||(5885969-5886091)
chr4 (397-497)||(3749711-3749811)
chr4 (393-438)||(5570524-5570569)
chr4 (101-158)||(5605581-5605638)
chr4 (47-203)||(5565209-5565365)
chr4 (394-453)||(5613847-5613906)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 5539104 - 5538667
Alignment:
Q  1 tgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  5539104 tgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaacttaccagtcaatccacatgattcaagactaagggtagtcaaatttctg 5539005  T
Q  101 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5539004 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtc 5538905  T
Q  201 ctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcatgcccttttgctgatataattacaccatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538904 ctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcatgcccttttgctgatataattacaccatc 5538805  T
Q  301 cagatacaactgcctaatactggtgagattttggacaaggctttgacgatttggattctcaagtttcagcccttgtcctattaaataactaagagaagag 400  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538804 cagatacaactgcctaatacttgtgagattttggacaaggctttgaagatttggattctcaagtttcagcccttgtcctattaaataactaagagaagag 5538705  T
Q  401 atatcaagagttaccaaccttgtaagctgggaaatctc 438  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  5538704 atatctagagttaccaaccttgtaagctgagaaatctc 5538667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 5559372 - 5559868
Alignment:
Q  1 tgttaagtcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctg 100  Q
    |||||||||||||||||||||||||||   ||||||||| || || |||||| || | ||||||| ||| | | |||| |||||||| ||||||||||||    
T  5559372 tgttaagtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgcaagactaagggttgtcaaatttctg 5559471  T
Q  101 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtc 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||| ||||    
T  5559472 aaattggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattctttagtcttgacagagatgaatcaaggggtc 5559571  T
Q  201 ctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcatgcccttttgctgatataattacaccatc 300  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5559572 ctgttaaattgcagttagacatggtcagttcttctagaccacgcaacggcaacaaagcattgctccattcatgcccttttgctgttataattacaccatc 5559671  T
Q  301 cagatacaactgcctaatactggtgagattttggacaaggctttgacgatttggattctcaagtttcagcccttgtcctattaaataactaagagaagag 400  Q
    |||||||||||||||||||||||| | |||| |||||||| ||||  ||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  5559672 cagatacaactgcctaatactggtaaaatttcggacaaggttttgtagatttgggttttcaagtttcagcccttgtcctgttaaataactaagagaagag 5559771  T
Q  401 atatcaagagttaccaaccttgtaagctgggaaatctcagttggaacctgcccttggaatccagcatatgacaaattcagataagtcaacttctcca 497  Q
    | ||||||||| ||||||||| | ||||| ||||||||    ||||  |||||    || | ||||||||||||||||||||| |||||||||||||    
T  5559772 agatcaagagtaaccaaccttttgagctgagaaatctctacaggaatttgccccacaaagctagcatatgacaaattcagatatgtcaacttctcca 5559868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 47 - 438
Target Start/End: Complemental strand, 5583128 - 5582734
Alignment:
Q  47 ggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccat 146  Q
    ||||||||||| ||||||||||| ||| |||| || ||||| || || ||| ||||||||||||||||||  ||||||||||| ||||||||||| ||||    
T  5583128 ggaaatttaccagtcaatccacaagatgcaagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttcccat 5583029  T
Q  147 cgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttctagaccatgtaa 246  Q
    | ||||||||||  ||||| |||| ||||||||  || || || ||||| || |||| || || ||| | ||||||  ||| | |||  ||   | | |     
T  5583028 caagaataatgactgataggttctttagtcttgttagggaagaatcaaggggacctgatagatcacaataagacatactcaatacttggaggttaggcag 5582929  T
Q  247 cggcaacaaagcattgctccattcatgcccttttgctgatataattacaccatccagatacaactgcctaatactggtgagattttggacaaggctttga 346  Q
     |||||||||||||| |||||||| || || |  |||  |||| |||||||||| ||||||| || ||||| |||||| |||||||||||||   | ||     
T  5582928 gggcaacaaagcattcctccattcttgtccctgagcttttatacttacaccatctagatacagcttcctaagactggtcagattttggacaaatttctgt 5582829  T
Q  347 cgatttggattctcaagtttcagcccttgtcctattaaata---actaagagaagagatatcaagagttaccaaccttgtaagctgggaaatctc 438  Q
     ||||||| |||||||||||||||||||||||| |||  ||   | ||| |||||| || |||||||| ||||||||||||||||| ||||||||    
T  5582828 agatttggtttctcaagtttcagcccttgtcctgttatgtagctattaacagaagatatgtcaagagtaaccaaccttgtaagctgagaaatctc 5582734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 396 - 497
Target Start/End: Complemental strand, 5885760 - 5885659
Alignment:
Q  396 aagagatatcaagagttaccaaccttgtaagctgggaaatctcagttggaacctgcccttggaatccagcatatgacaaattcagataagtcaacttctc 495  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||| || ||| || |||||||||| |||||||||||||||||||||||||||    
T  5885760 aagagatatcaagagtaaccaaccttgtaagatgggaaatctcaattggaatctccccctgaaatccagcatctgacaaattcagataagtcaacttctc 5885661  T
Q  496 ca 497  Q
    ||    
T  5885660 ca 5885659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 83 - 339
Target Start/End: Original strand, 3749397 - 3749653
Alignment:
Q  83 agggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgaca 182  Q
    ||||| ||||| ||| | ||||||| ||||||||  |||||||| || ||||||||||| ||||| ||||||||||  ||||| |||||||||||||  |    
T  3749397 agggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgtta 3749496  T
Q  183 gagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcatgcccttttgc 282  Q
    | || || ||||| ||||||| ||||| ||||| ||||||| ||| |||||  |   || | ||||||||||||||||||||| ||||||| |||   |     
T  3749497 gggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcttgcaagtcacgcaacggcaacaaagcattgctcaattcatgtcctcgaga 3749596  T
Q  283 tgatataattacaccatccagatacaactgcctaatactggtgagattttggacaag 339  Q
    || |||| |||  ||||| ||||| |  ||||||||| |||||||||||||||||||    
T  3749597 tgttatacttatcccatctagatatagttgcctaatattggtgagattttggacaag 3749653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 35 - 497
Target Start/End: Original strand, 5858461 - 5858923
Alignment:
Q  35 aagattttctgcggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaa 134  Q
    ||||| ||||| |||||| ||||||  ||| ||||  || |||| || ||||||||||| ||| | ||||| | |||||||||||| |||||||| ||||    
T  5858461 aagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaaatttgcaaatgtttcaggaactggggatgaaa 5858560  T
Q  135 aattgtttccatcgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttc 234  Q
    ||| |||  |||| ||||||||||  ||||| ||||||||| |||  || || || ||||| || |||  || |  ||||  ||||||| ||| |||||     
T  5858561 aatagttctcatcaagaataatgactgataggttctctagttttgttagggaagaatcaaggggacctaatagaccacaggaagacatgctcaattcttg 5858660  T
Q  235 tagaccatgtaacggcaacaaagcattgctccattcatgcccttttgctgatataattacaccatccagatacaactgcctaatactggtgagattttgg 334  Q
    |||     | |||||||||||||||||| |||||||||| || || ||||||||| |||||| ||| |||||||| ||||| |   | || ||||||||     
T  5858661 taggtttcgcaacggcaacaaagcattgatccattcatgtcccttagctgatatacttacactatctagatacaattgccttagttttgtcagattttgc 5858760  T
Q  335 acaaggctttgacgatttggattctcaagtttcagcccttgtcctattaaataactaagagaagagatatcaagagttaccaaccttgtaagctgggaaa 434  Q
    |||||  ||||  ||||| | |    || | |||||| |||   ||  ||||| | | ||||||||||||||||||| ||||||||| ||||||||||||    
T  5858761 acaagcttttgtagattttggtggctaattgtcagcctttgcaataaaaaatagccaggagaagagatatcaagagtaaccaaccttataagctgggaaa 5858860  T
Q  435 tctcagttggaacctgcccttggaatccagcatatgacaaattcagataagtcaacttctcca 497  Q
    | ||  |||||| || ||| || |||| ||||| ||  | ||||||||| |||||||||||||    
T  5858861 tttctattggaatcttcccgtgaaatctagcatctgtaagattcagatatgtcaacttctcca 5858923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 335
Target Start/End: Original strand, 5613629 - 5613803
Alignment:
Q  161 gatagattctctagtcttgacagagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcat 260  Q
    ||||| ||||||||| |||| || || || ||||||||||||| || |||||||||||||||| ||||||||| |||  |    || |||||||||||||    
T  5613629 gataggttctctagttttgaaagggaagaatcaagaggtcctgatagattacagttagacatgctcagttcttgtaggtcgctcaaaggcaacaaagcat 5613728  T
Q  261 tgctccattcatgcccttttgctgatataattacaccatccagatacaactgcctaatactggtgagattttgga 335  Q
    || |||||||||| || |  | || |||| ||| |||||| |||||||  ||||| ||| |||||||||||||||    
T  5613729 tgatccattcatgtccctgagatgttatacttataccatctagatacagttgcctcatattggtgagattttgga 5613803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 5570960 - 5570789
Alignment:
Q  8 tcaataaatgacaatgttccccgttggaagattttctgcggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctgaaattgg 107  Q
    ||||||||||||||||||||   ||| ||||| || || |||||| |||| ||||||||||| |||  ||| || ||||| || |  ||| | |||||||    
T  5570960 tcaataaatgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatgaaagactgagggtggttagttttttaaaattgg 5570861  T
Q  108 aaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttg 179  Q
    |||||||||| |||||| |||| || |||| ||| ||||| ||||||||||  ||||| |||| ||||||||    
T  5570860 aaaatgtttctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagtcttg 5570789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 335
Target Start/End: Complemental strand, 5894936 - 5894702
Alignment:
Q  101 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtc 200  Q
    ||||||| ||||||||| |||| || ||| ||||||||||||| ||  ||||||||||  || || |||| ||||||||| || || || ||||| | ||    
T  5894936 aaattggcaaatgtttctggcaatgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagtcttgatagggaagaatcaagggatc 5894837  T
Q  201 ctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcatgcccttttgctgatataattacaccatc 300  Q
    |||  |||| ||| ||||||||| ||| ||||| |||  || | || || | ||||||||||||||||| ||| |  |  | || |||| ||| ||||||    
T  5894836 ctgacaaatcacaattagacatgctcaattcttgtaggtcacgcaaaggtatcaaagcattgctccatttatgtctctgagatgttatagttataccatc 5894737  T
Q  301 cagatacaactgcctaatactggtgagattttgga 335  Q
     |||||||  ||||||||| |||||||||||||||    
T  5894736 tagatacagttgcctaatattggtgagattttgga 5894702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 497
Target Start/End: Complemental strand, 5894653 - 5894552
Alignment:
Q  396 aagagatatcaagagttaccaaccttgtaagctgggaaatctcagttggaacctgcccttggaatccagcatatgacaaattcagataagtcaacttctc 495  Q
    |||||| ||||||||| |||||||||||||| || ||||||||| |||||| ||||||    || | ||| | |||||||||||||||||||||||||||    
T  5894653 aagagagatcaagagtaaccaaccttgtaagttgtgaaatctcaattggaatctgccccacaaagctagcctttgacaaattcagataagtcaacttctc 5894554  T
Q  496 ca 497  Q
    ||    
T  5894553 ca 5894552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 271
Target Start/End: Original strand, 5553618 - 5553842
Alignment:
Q  47 ggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccat 146  Q
    |||||| |||| || |||||||| |||  ||| |||||||| ||||  |||   ||||||| ||||||||| || || ||||||||||||||||| | ||    
T  5553618 ggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcctat 5553717  T
Q  147 cgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttctagaccatgtaa 246  Q
    | |||||||||| |||||| || | |||| |||| || || || || || || |||| || || ||||||| ||||| |||  |||| |||  ||   |     
T  5553718 caagaataatgaccgataggttttttagttttgatagggaagaatctagtggccctgctagatcacagttatacatgctcaactcttgtagttcacacag 5553817  T
Q  247 cggcaacaaagcattgctccattca 271  Q
    |||||||||||||||||||||||||    
T  5553818 cggcaacaaagcattgctccattca 5553842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 5886091 - 5885969
Alignment:
Q  101 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtc 200  Q
    ||||||| ||||||||  ||||||||||| |||||||||||  |  | |||||||||| |||||| ||||||||| |||| || || || ||||| ||||    
T  5886091 aaattggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagttttgaaagggaggaatcaaggggtc 5885992  T
Q  201 ctgttaaattacagttagacatg 223  Q
    ||| || | |||||||| |||||    
T  5885991 ctgatagactacagttatacatg 5885969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 497
Target Start/End: Original strand, 3749711 - 3749811
Alignment:
Q  397 agagatatcaagagttaccaaccttgtaagctgggaaatctcagttggaacctgcccttggaatccagcatatgacaaattcagataagtcaacttctcc 496  Q
    ||||| ||||||| | ||||||||||||||||| ||||||||| | |||| |||||||   || | ||| | ||||||||||||||| |||||||| |||    
T  3749711 agagagatcaagaataaccaaccttgtaagctgcgaaatctcaatcggaatctgccctacaaagctagcttgtgacaaattcagatatgtcaacttatcc 3749810  T
Q  497 a 497  Q
    |    
T  3749811 a 3749811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 5570569 - 5570524
Alignment:
Q  393 gagaagagatatcaagagttaccaaccttgtaagctgggaaatctc 438  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  5570569 gagaagagagatcaagagtaaccaaccttgtaagctgagaaatctc 5570524  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 5605581 - 5605638
Alignment:
Q  101 aaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatga 158  Q
    ||||||| ||||||||| ||||||||||| ||||||||||| ||||| |||| |||||    
T  5605581 aaattggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatga 5605638  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 5565209 - 5565365
Alignment:
Q  47 ggaaatttaccggtcaatccacatgattcaaggctaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccat 146  Q
    |||||| |||||||||| |||||   | |||| || ||||| ||||  ||| | ||||||| ||||||||  ||||||||||| |||||||| ||  ||     
T  5565209 ggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcac 5565308  T
Q  147 cgagaataatgatcgatagattctctagtcttgacagagatgattcaagaggtcctg 203  Q
    | ||||||||||  ||||| ||||||||| |||| || || || ||||| |||||||    
T  5565309 caagaataatgactgataggttctctagttttgaaagggaagaatcaaggggtcctg 5565365  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 5613847 - 5613906
Alignment:
Q  394 agaagagatatcaagagttaccaaccttgtaagctgggaaatctcagttggaacctgccc 453  Q
    |||||||| ||||||||| |||||||| || ||||||||||||||  |||||| ||||||    
T  5613847 agaagagagatcaagagtaaccaacctcgtgagctgggaaatctctattggaatctgccc 5613906  T

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