View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_low_20 (Length: 201)
Name: NF6782_low_20
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 27075789 - 27076000
Alignment:
| Q |
1 |
acattgggcgcgtatacagnnnnnnnccctctacttttcatgagcgcacacac--gttgcatcactctattgtttgtgagactcttcctcatccact--- |
95 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075789 |
acattgggcacgtatacagtttttttccctctacttttcatgagcgcacacacacgttgcatcactctattgtttgtgagactcttcctcatccactatt |
27075888 |
T |
|
| Q |
96 |
--------tcccacacttttgttttgagactttttcatttgtcatacctt-----tcttttcctcacaacttcactctttattccttaagaggtaaaacc |
182 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075889 |
cattaacttcccacacttttgttttgagactttttcatttgtcttaccttcaccttcttttcctcacaacttcactctttattccttaagaggtaaaacc |
27075988 |
T |
|
| Q |
183 |
attttacttgat |
194 |
Q |
| |
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|||||||||||| |
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| T |
27075989 |
attttacttgat |
27076000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 27155886 - 27156097
Alignment:
| Q |
1 |
acattgggcgcgtatacagnnnnnnnccctctacttttcatgagcgcacacac--gttgcatcactctattgtttgtgagactcttcctcatccact--- |
95 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27155886 |
acattgggcacgtatacagtttttttccctctacttttcatgagcgcacacacacgttgcatcactctattgtttgtgagactcttcctcatccactatt |
27155985 |
T |
|
| Q |
96 |
--------tcccacacttttgttttgagactttttcatttgtcatacctt-----tcttttcctcacaacttcactctttattccttaagaggtaaaacc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27155986 |
cattaacttcccacacttttgttttgagactttttcatttgtcttaccttcaccttcttttcctcacaacttcactctttattccttaagaggtaaaacc |
27156085 |
T |
|
| Q |
183 |
attttacttgat |
194 |
Q |
| |
|
|||||||||||| |
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|
| T |
27156086 |
attttacttgat |
27156097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 27167045 - 27166834
Alignment:
| Q |
1 |
acattgggcgcgtatacagnnnnnnnccctctacttttcatgagcgcacacac--gttgcatcactctattgtttgtgagactcttcctcatccact--- |
95 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27167045 |
acattgggcacgtatacagtttttttccctctacttttcatgagcgcacacacacgttgcatcactctattgtttgtgagactcttcctcatccactatt |
27166946 |
T |
|
| Q |
96 |
--------tcccacacttttgttttgagactttttcatttgtcatacctt-----tcttttcctcacaacttcactctttattccttaagaggtaaaacc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27166945 |
cattaacttcccacacttttgttttgagactttttcatttgtcttaccttcaccttcttttcctcacaacttcactctttattccttaagaggtaaaacc |
27166846 |
T |
|
| Q |
183 |
attttacttgat |
194 |
Q |
| |
|
|||||||||||| |
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|
| T |
27166845 |
attttacttgat |
27166834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 1284638 - 1284585
Alignment:
| Q |
141 |
tttcctcacaacttcactctttattccttaagaggtaaaaccattttacttgat |
194 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||||||| |
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| T |
1284638 |
tttcctcacaacttcactctttgtttctgaagaggtaaaaccattttacttgat |
1284585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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