View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6782_low_3 (Length: 489)
Name: NF6782_low_3
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 84 - 471
Target Start/End: Original strand, 32982654 - 32983045
Alignment:
| Q |
84 |
ttgaggtatacttgagtatgaatgtgagattgttttgcgattgagaagttgataactttagcagcattaggagtggttttgaccaattctttacactgcg |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982654 |
ttgaggtatacttgagtatgaatgtgagattgttttgcgattgagaagttgataactttagcagcattaggagtggttttgaccaattctttacactgcg |
32982753 |
T |
|
| Q |
184 |
caagaaagggaaatgtttttgccatttttcagggtgatgatatgtgacaatacaattatta---tcttatatgtcttgatgcctaagtatgtgaatgaat |
280 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982754 |
caagaaaggtaaacgtttttgccatttttcagtgtgatgatatgtgacaatacaattactaatatcttatatgtcttgatgcctaagtatgtgaatgaat |
32982853 |
T |
|
| Q |
281 |
taatctagctcttatatatatt----gtatgagtaagaaaatatctaaatgaagggggataaaaaagtggaaatagattgtgttgtatgacacgtggtgg |
376 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982854 |
taatctagctcttatatatatatatagtatgagtaagaaaatatctaaatgaagggg-ataaaaaagtggaaatagattgtgttgtatgacacgtggtgg |
32982952 |
T |
|
| Q |
377 |
aaggtaagacatgagtcatgaatatattggattttgtaacacaacacgttcatacgttgtcactatggcaggcagagtctattggttgtgtgaca |
471 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
32982953 |
aaggtaagacatgagtcatga--atattggattttgtaacacaacacgttcgtacgttgtcactatggcaggcagagcctattggttgcgtgaca |
32983045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 84 - 327
Target Start/End: Original strand, 27038193 - 27038432
Alignment:
| Q |
84 |
ttgaggtatacttgagtatgaatgtgagattgttttgcgattgagaagttgataactttagcagcattaggagtggttttgaccaattctttacactgcg |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27038193 |
ttgaggtatacttgagtatgaatgtgagattgttttgcaattgagaagttgaaaactttggcagcattaggagtggttttgaccaattctttacactgcg |
27038292 |
T |
|
| Q |
184 |
caagaaagggaaatgtttttgccatttttcagggtgatgatatgtgacaatacaattattatcttatatgtcttgatgcctaagtatgtgaatgaattaa |
283 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| |||||||| |||| ||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
27038293 |
caagaaagtgaaatgtttttgccatttttca--gtgatgataggtgacaat--tattaatatct--tatgtcttgatgc--aagtatgtgaatgaattaa |
27038384 |
T |
|
| Q |
284 |
tctagct----cttatatatattgtatgagtaagaaaatatctaaatg |
327 |
Q |
| |
|
||||||| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
27038385 |
tctagcttatatatatatatatagtatgaggaagtaaatatctaaatg |
27038432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 439
Target Start/End: Original strand, 27038428 - 27038522
Alignment:
| Q |
347 |
aaatagattgtgttgtatgacacgtggtggaaggtaagacatgagtcatgaatat---attggattttgtaacacaacacgttcatacgttgtcac |
439 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||| |
|
|
| T |
27038428 |
aaatggattgtgttgtgtgacacgtggtggaaggtaagacatgagtcatgaatattggagt-gattttgtaacacaacacgttcttacgttgtcac |
27038522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University