View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6782_low_4 (Length: 488)
Name: NF6782_low_4
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_4 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 183535 - 183061
Alignment:
| Q |
1 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183535 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
183436 |
T |
|
| Q |
101 |
ttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183435 |
ttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagc |
183336 |
T |
|
| Q |
201 |
tcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183335 |
tcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactc |
183236 |
T |
|
| Q |
301 |
ggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183235 |
ggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctcc |
183136 |
T |
|
| Q |
401 |
gcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183135 |
gcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
183061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 493981 - 494455
Alignment:
| Q |
1 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493981 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
494080 |
T |
|
| Q |
101 |
ttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494081 |
ttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagc |
494180 |
T |
|
| Q |
201 |
tcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494181 |
tcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactc |
494280 |
T |
|
| Q |
301 |
ggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494281 |
ggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctcc |
494380 |
T |
|
| Q |
401 |
gcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494381 |
gcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
494455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 18191642 - 18192117
Alignment:
| Q |
1 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191642 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
18191741 |
T |
|
| Q |
101 |
ttttcagggtaagaagggg-tagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaag |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191742 |
ttttcagggtaagaagggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaag |
18191841 |
T |
|
| Q |
200 |
ctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaact |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191842 |
ctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtacagaatacctaggggcgcgagacaactctctctaaggaact |
18191941 |
T |
|
| Q |
300 |
cggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191942 |
cggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctc |
18192041 |
T |
|
| Q |
400 |
cgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18192042 |
cgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
18192117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 287 - 475
Target Start/End: Complemental strand, 16337426 - 16337238
Alignment:
| Q |
287 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
386 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
|
|
| T |
16337426 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcttaagtgactgtttatcaa |
16337327 |
T |
|
| Q |
387 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16337326 |
aaatacaggtctctgcaaagtagtaagaccatgtatgggggttgacgcctgcccagtgcaggaaggttaaggaagttggtgacctgatg |
16337238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 337 - 469
Target Start/End: Original strand, 50525850 - 50525982
Alignment:
| Q |
337 |
ctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcct |
436 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
50525850 |
ctcctcataaaaggggtcgcagtgaccaggcccgggcgactgtttatcaaaaacacaggtcttcgcaaagtcgtaagaccatgtatgggggctgacgtct |
50525949 |
T |
|
| Q |
437 |
gcccagtgccggaaggttaaggaagttggtgac |
469 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
50525950 |
gtccagtgccggaaggttaaggaagttggtgac |
50525982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 433 - 475
Target Start/End: Original strand, 29443302 - 29443344
Alignment:
| Q |
433 |
gcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443302 |
gcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
29443344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 42247850 - 42247894
Alignment:
| Q |
292 |
aaggaactcggcaaaatagccccgtaacttcgggagaaggggtgc |
336 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42247850 |
aaggaactcggcaaaatgaccccgtaacttcgggagaaggggtgc |
42247894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 34658980 - 34659454
Alignment:
| Q |
1 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658980 |
tgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgtt |
34659079 |
T |
|
| Q |
101 |
ttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659080 |
ttttcagggtaagaaggggtagagaaaatgcctccagccaagattcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagc |
34659179 |
T |
|
| Q |
201 |
tcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactc |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659180 |
tcgaacgaccttaaacaaaatggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactt |
34659279 |
T |
|
| Q |
301 |
ggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctcc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
34659280 |
ggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggccctggcgactgtttaccaaaagcacaggtctcc |
34659379 |
T |
|
| Q |
401 |
gcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
34659380 |
gcaaagtcgtaagaccatgtatgggggctgacgcctgcctagtgccggaaggttaaggaagttggtgacccgatg |
34659454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 8174936 - 8174997
Alignment:
| Q |
68 |
ttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtagagaaaatg |
130 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8174936 |
ttatcggttcaagcacacaaggtg-cccttgtttttgtagggtaagaagggatagagaaaatg |
8174997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 23 - 475
Target Start/End: Original strand, 14404532 - 14404984
Alignment:
| Q |
23 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404532 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
14404631 |
T |
|
| Q |
123 |
agaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404632 |
agaaaatggctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
14404731 |
T |
|
| Q |
223 |
gtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404732 |
gtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
14404831 |
T |
|
| Q |
323 |
gggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404832 |
gggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaaaaacacaggtctccgcaaagtcgtaagaccatgtat |
14404931 |
T |
|
| Q |
423 |
gggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404932 |
gggggctgacgtctgcccagtgccggaaggttaaggaagttggtgacctgatg |
14404984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 45610231 - 45610202
Alignment:
| Q |
1 |
tgaatattcctgtactacctcttgttggtc |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45610231 |
tgaatattcctgtactacctcttgttggtc |
45610202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 287 - 475
Target Start/End: Original strand, 55434 - 55622
Alignment:
| Q |
287 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcccgggcgactgtttaccaa |
386 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
|
|
| T |
55434 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtgaccaggcttaagtgactgtttatcaa |
55533 |
T |
|
| Q |
387 |
aaacacaggtctccgcaaagtcgtaagaccatgtatgggggctgacgcctgcccagtgccggaaggttaaggaagttggtgacctgatg |
475 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55534 |
aaatacaggtctctgcaaagtagtaagaccatgtatgggggttgacgcctgcccagtgcaggaaggttaaggaagttggtgacctgatg |
55622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 317
Target Start/End: Complemental strand, 7869347 - 7869276
Alignment:
| Q |
246 |
aggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgta |
317 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
7869347 |
aggtgggtaggtagagaatacctaggagtgtgagacaaccctctctaaggaactcgataaaatagacccgta |
7869276 |
T |
|
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 7869275 - 7869234
Alignment:
| Q |
355 |
gcagtgaccaggcccgggcgactgtttaccaaaaacacaggtc |
397 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
7869275 |
gcagtgaccaggtccgggcgactgtttacc-aaaacacaggtc |
7869234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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