View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_low_6 (Length: 407)
Name: NF6782_low_6
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 7684131 - 7684537
Alignment:
| Q |
1 |
tcaactgcccggaaccaaacgggctaggatcttaagatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcct |
100 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7684131 |
tcaactacccggaaccaaacgggctaggatcttgggatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcct |
7684230 |
T |
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| Q |
101 |
cgatgcatgaaaggaataacaccgctacttgaatttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcacttgctaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7684231 |
cgatgcatgaaaggaataacaccgctacttgaatttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcacttgctaccaa |
7684330 |
T |
|
| Q |
201 |
aattccactaatgaaactaaagcttttccccatggattgcctagattgcaggctcctgctaaagccattgcctcctgttgctgccagcttgaaataattt |
300 |
Q |
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| T |
7684331 |
aattcaactattgaaactaaagcttttccccatggattgcctagattgcaggctcctgctaaagccattgcctcctgttgctgccagcttgaaataattt |
7684430 |
T |
|
| Q |
301 |
aaaattaaccacatatagctccttaatacacacaacactccctctgcttccaaacatagcccaactttgtatttagccgagaacatctgaacttgaccat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7684431 |
aaaattaaccacatatagctccttaatacacacaacactccctctgcttccaaacatagcccaactttgtatttagccgagaacatctgaacttgaccat |
7684530 |
T |
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| Q |
401 |
caccagc |
407 |
Q |
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| T |
7684531 |
caccagc |
7684537 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 25812365 - 25812213
Alignment:
| Q |
35 |
agatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcctcgatgcatgaaaggaataacaccgctacttgaat |
134 |
Q |
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||||| ||||||| ||||||| |||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||||| | ||| | ||||| || |
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| T |
25812365 |
agatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcacttgattcctctatacatgaaaggatt---accacgacttgtat |
25812269 |
T |
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| Q |
135 |
ttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcac |
190 |
Q |
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|||||||||| |||||| ||||| |||||||| |||| | |||||||||| |||| |
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| T |
25812268 |
ttcttaatcatttgtgcgccttagatcagctcaaatatgtcctcaaatcaatgcac |
25812213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 7426185 - 7426108
Alignment:
| Q |
175 |
tctcaaatcaaagcac-ttgctaccaaaatt-ccactaatgaaactaaagcttttccccatggattgcctagattgca |
250 |
Q |
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||||| ||||| |||| |||||||||| ||| ||||| |||| ||||||||||||||||||| ||||| |||||||| |
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| T |
7426185 |
tctcagatcaatgcacattgctaccaatatttccactcttgaagctaaagcttttccccatggtttgccaagattgca |
7426108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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