View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6782_low_8 (Length: 395)
Name: NF6782_low_8
Description: NF6782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6782_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 10444813 - 10444999
Alignment:
| Q |
39 |
aaccatatacaatctcattgttgagaattgaaatgctgactaggatccagcatccttcagaaagaagtatgacctaacctagttcatagaatcatcccnn |
138 |
Q |
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| T |
10444813 |
aaccatatacaatctcattgttgagaattgaaatgctgactaggatccagcatccttcagaaagaagtatgacctaacctagttcatagaatcatccctt |
10444912 |
T |
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| Q |
139 |
nnnnnggagctaaattataattccttgcgtggcctttgacatgtaggaacatttaaataaacaccaattaatacaactgggaatcct |
225 |
Q |
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| T |
10444913 |
tttttggagctaaattataattccttgcgtggcctttgacttgtaggaacatttaaataaacaccaattaatacaactgggaatcct |
10444999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 10445069 - 10445163
Alignment:
| Q |
295 |
tacatatatgcaggtgggatctaaaatgggttcctatatgagatagtcaccaactacctcgtagagaatgtgtacaaatgaagtgtctctttctt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10445069 |
tacatatatgcaggtgggatctaaaatgggttcctatatgagatagtcaccaactacctcgtagagaatgtgtacaaatgaagtatctctttctt |
10445163 |
T |
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