View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6784_high_2 (Length: 453)
Name: NF6784_high_2
Description: NF6784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6784_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 23210850 - 23211199
Alignment:
| Q |
1 |
ttaacctaaatcttaagacattgagttatgagtcttataacttatatagtgttcaacatccattttttcatctaatatgagacttctgcgcacacttgtt |
100 |
Q |
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| T |
23210850 |
ttaacctaaatcttaagacattgagttacgggtcttataacttatatagtgttcaacatccattttttcatctaatatgagacttctgcgtacacttgtt |
23210949 |
T |
|
| Q |
101 |
acataataatctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgccctaccattattgttaggaaga |
200 |
Q |
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| T |
23210950 |
acataataacctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgccctaccattattgttaggaaga |
23211049 |
T |
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| Q |
201 |
cttccggcataatgagtcattcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccacattgggtcaagaataacc |
300 |
Q |
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| T |
23211050 |
cttccggcataatgagtcattcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccacattgggtcaagaataacc |
23211149 |
T |
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| Q |
301 |
atataaatgagttggacacttcaacttaaccctacaagtatctacgcaac |
350 |
Q |
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| T |
23211150 |
atataaatgagttggacacttcaacttaaccctacaagtatctacgcaac |
23211199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 38259343 - 38259380
Alignment:
| Q |
50 |
tgttcaacatccattttttcatctaatatgagacttct |
87 |
Q |
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| T |
38259343 |
tgttcaacatctattttttcatctaatatgagacttct |
38259380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 41038977 - 41039019
Alignment:
| Q |
276 |
catccacattgggtcaagaataaccatataaatgagttggaca |
318 |
Q |
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| T |
41038977 |
catccgcattgggtcaagaataaccatgtaaatgagttagaca |
41039019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 47157690 - 47157597
Alignment:
| Q |
239 |
tgatatcactgtaggatcatcaggggagctcga-gaaacatccacattgggtcaagaataaccatataaatgagttggacacttcaacttaacc |
331 |
Q |
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| T |
47157690 |
tgataccactgttggatcatgaggggagccagatgaatcatccaaattgggtcaagaacaatcacacaaatgagttggatactgcatcttaacc |
47157597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 31503515 - 31503547
Alignment:
| Q |
42 |
ttatatagtgttcaacatccattttttcatcta |
74 |
Q |
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| T |
31503515 |
ttatatagtgttcaacatccattttctcatcta |
31503547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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