View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6784_high_3 (Length: 400)
Name: NF6784_high_3
Description: NF6784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6784_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 8554300 - 8553960
Alignment:
| Q |
1 |
aattttgcttgtttgaaagggatgctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaacaaaacctaaatatct |
100 |
Q |
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| T |
8554300 |
aattttgcttgtttgaaagggatgctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaacaaaacctaaatatct |
8554201 |
T |
|
| Q |
101 |
tgctaggacaatatggctgacgctaaaagatggtgtaagactaatgttataaccgccatatccatataataaacaagggtgtgaaccatccaaaataata |
200 |
Q |
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| T |
8554200 |
tgctaggacaatatggctgacgctaaaagatggtgtaagactaatgttataaccgccatatccatataataaacaagggtgtgaaccatccaaaataata |
8554101 |
T |
|
| Q |
201 |
tcctttctcgcaacaatgaacattgggatcttggttccatctttactaggagcaaaaacctgaaatgtataattttgcatatgaaataatcaaacacaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554100 |
tcctttctcgcaacaatgaacattgggatcttggttccatctttactaggagcaaaaacctgaaatgtataattttgcatatgaaataatcaaacacaag |
8554001 |
T |
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| Q |
301 |
ctaatgaaatgaaataagacaaaccagattccaatagacaa |
341 |
Q |
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| T |
8554000 |
ctaatgaaatgaaataagacaaaccaaattccaatagacaa |
8553960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 8558775 - 8558508
Alignment:
| Q |
1 |
aattttgcttgtttgaaagggatgctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaacaaaacctaaatatct |
100 |
Q |
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| T |
8558775 |
aattttgctttttcgaaagggatcctgctttatgccactcctctccgtattctccaccaccacgaatatttgctatgcagataacagaacctaaatgcct |
8558676 |
T |
|
| Q |
101 |
tgctaggacaatatggctgacgctaaaagatggtgtaagactaatgttataaccgccatatccatataataaacaagggtgtgaaccatccaaaataata |
200 |
Q |
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| T |
8558675 |
tgcaaggacaatacgactgacactgaaaaatggtgtaagactgacgttaaaaccaccatatccatataacaaacaagggtgtgaaccattcaaaattata |
8558576 |
T |
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| Q |
201 |
tcctttctcgcaacaatgaacattgggatcttggttccatctttactaggagcaaaaacctgaaatgt |
268 |
Q |
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| T |
8558575 |
tcctttctggaaacaatgaacatcggtatcttggttccatctttactaggcgcaaaaacctgaaatgt |
8558508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 8553394 - 8553353
Alignment:
| Q |
337 |
gacaaaaggaaggaaggcattttcattctgaaaaccttcgag |
378 |
Q |
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| T |
8553394 |
gacaaaaggaaggaaggcattttcattctgaaaaccttcgag |
8553353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 53738675 - 53738432
Alignment:
| Q |
25 |
ctgctttatgccattcctctccgtattctccaccgccacggatatttgctatgcagaaaacaaaacctaaatatcttgctaggacaatatggctgacgct |
124 |
Q |
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|||||||||||||||| || || ||||||||||| ||||| ||||| || |||||| ||||||||||||||| | ||| || ||||| | || || || |
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| T |
53738675 |
ctgctttatgccattcttccccatattctccaccaccacgaatattcgcaatgcagtaaacaaaacctaaatgttttgtgagtacaatgcgactaacact |
53738576 |
T |
|
| Q |
125 |
aaaagatggtgtaagactaatgttataaccgccatatccatataataaacaagggtgtgaaccatccaaaataatatcctttctcgcaacaatgaacatt |
224 |
Q |
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|| |||||||||| ||| |||||| |||| |||||||||||||| | ||| |||||||||||||| |||| |||||||||| | ||||||||||||||| |
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| T |
53738575 |
gaaggatggtgtaatactgatgttaaaaccaccatatccatataacagacacgggtgtgaaccatcgaaaacaatatccttttttgcaacaatgaacatt |
53738476 |
T |
|
| Q |
225 |
gggatcttggttccatctttactaggagcaaaaacctgaaatgt |
268 |
Q |
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| T |
53738475 |
gggatcttggtgccatctttactagggaaaaaaacctgaaatgt |
53738432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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