View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6784_high_4 (Length: 377)

Name: NF6784_high_4
Description: NF6784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6784_high_4
NF6784_high_4
[»] chr2 (27 HSPs)
chr2 (109-221)||(25496434-25496548)
chr2 (116-221)||(12797861-12797968)
chr2 (120-216)||(19891568-19891664)
chr2 (109-221)||(24537073-24537187)
chr2 (109-221)||(25477339-25477453)
chr2 (119-221)||(25637825-25637928)
chr2 (121-221)||(29678610-29678712)
chr2 (109-216)||(17968014-17968123)
chr2 (137-216)||(34495186-34495265)
chr2 (109-216)||(9179778-9179886)
chr2 (109-216)||(9184469-9184577)
chr2 (109-216)||(30651851-30651960)
chr2 (109-220)||(40846632-40846745)
chr2 (109-200)||(19896903-19896994)
chr2 (109-223)||(42925726-42925841)
chr2 (123-211)||(12361191-12361279)
chr2 (109-197)||(18345372-18345462)
chr2 (120-216)||(17974411-17974510)
chr2 (109-222)||(32080307-32080423)
chr2 (119-217)||(15446342-15446443)
chr2 (164-216)||(1934098-1934150)
chr2 (109-223)||(31328991-31329108)
chr2 (109-223)||(31335712-31335829)
chr2 (119-217)||(28604022-28604122)
chr2 (185-221)||(12002033-12002069)
chr2 (115-214)||(44630504-44630605)
chr2 (109-141)||(1934059-1934091)
[»] chr8 (21 HSPs)
chr8 (109-222)||(28559166-28559281)
chr8 (109-221)||(44924971-44925085)
chr8 (109-221)||(15950622-15950739)
chr8 (120-221)||(38181343-38181446)
chr8 (109-221)||(2966517-2966631)
chr8 (109-221)||(26780036-26780150)
chr8 (111-222)||(28564347-28564460)
chr8 (119-221)||(18875445-18875549)
chr8 (109-216)||(40124944-40125053)
chr8 (119-220)||(1808384-1808487)
chr8 (119-223)||(23547671-23547770)
chr8 (119-216)||(33417467-33417566)
chr8 (118-200)||(33100541-33100624)
chr8 (109-221)||(1909997-1910112)
chr8 (114-221)||(24672374-24672483)
chr8 (164-221)||(17027073-17027130)
chr8 (164-221)||(17557565-17557622)
chr8 (111-161)||(5884889-5884939)
chr8 (109-162)||(17021247-17021301)
chr8 (109-162)||(17551684-17551738)
chr8 (175-223)||(22714116-22714164)
[»] chr5 (26 HSPs)
chr5 (109-221)||(10759411-10759525)
chr5 (109-221)||(6154482-6154596)
chr5 (109-216)||(26668215-26668324)
chr5 (109-216)||(26939812-26939921)
chr5 (109-220)||(37247849-37247962)
chr5 (109-216)||(37646105-37646216)
chr5 (109-221)||(12103986-12104100)
chr5 (109-216)||(37536987-37537097)
chr5 (109-216)||(7452691-7452801)
chr5 (109-216)||(29167023-29167132)
chr5 (109-212)||(36430459-36430564)
chr5 (122-221)||(20180216-20180314)
chr5 (119-199)||(40148797-40148879)
chr5 (109-212)||(36424579-36424684)
chr5 (120-222)||(17162787-17162892)
chr5 (120-217)||(17159312-17159412)
chr5 (111-180)||(6511655-6511726)
chr5 (172-220)||(6511744-6511792)
chr5 (110-215)||(23689009-23689116)
chr5 (127-217)||(15149601-15149692)
chr5 (154-216)||(39519332-39519394)
chr5 (154-216)||(39523971-39524033)
chr5 (120-217)||(35678959-35679058)
chr5 (174-217)||(22832636-22832679)
chr5 (113-209)||(40567656-40567754)
chr5 (109-141)||(9725824-9725856)
[»] chr4 (34 HSPs)
chr4 (109-221)||(13064860-13064974)
chr4 (109-221)||(16421978-16422092)
chr4 (109-220)||(55252577-55252690)
chr4 (109-218)||(33462407-33462515)
chr4 (109-221)||(12822960-12823074)
chr4 (121-245)||(33468064-33468195)
chr4 (109-220)||(2820725-2820838)
chr4 (109-216)||(8694650-8694759)
chr4 (109-221)||(32081215-32081329)
chr4 (109-221)||(32220614-32220728)
chr4 (109-216)||(31728416-31728524)
chr4 (109-216)||(37258913-37259022)
chr4 (109-216)||(37263613-37263722)
chr4 (109-221)||(19107510-19107624)
chr4 (119-205)||(5925857-5925943)
chr4 (109-220)||(13060399-13060512)
chr4 (119-205)||(27183183-27183269)
chr4 (109-216)||(31274451-31274560)
chr4 (109-217)||(51698863-51698975)
chr4 (109-214)||(19102905-19103012)
chr4 (113-216)||(31766809-31766914)
chr4 (149-221)||(19907180-19907252)
chr4 (117-217)||(29349263-29349366)
chr4 (119-216)||(5270482-5270582)
chr4 (123-220)||(23094042-23094141)
chr4 (109-223)||(48275889-48276003)
chr4 (120-197)||(6943740-6943819)
chr4 (109-217)||(12875340-12875450)
chr4 (127-205)||(40408896-40408975)
chr4 (137-224)||(16948929-16949017)
chr4 (126-201)||(8028215-8028292)
chr4 (165-222)||(28601560-28601617)
chr4 (192-221)||(39216233-39216262)
chr4 (109-141)||(8029385-8029417)
[»] chr6 (22 HSPs)
chr6 (109-221)||(20747347-20747461)
chr6 (109-220)||(16835212-16835325)
chr6 (109-221)||(2699165-2699279)
chr6 (109-221)||(19994434-19994548)
chr6 (109-221)||(11569742-11569855)
chr6 (109-216)||(17963608-17963717)
chr6 (109-221)||(25313523-25313639)
chr6 (109-221)||(26201017-26201133)
chr6 (119-221)||(11533761-11533865)
chr6 (119-221)||(11559271-11559375)
chr6 (109-216)||(6406910-6407019)
chr6 (119-221)||(5856917-5857021)
chr6 (109-221)||(12405410-12405524)
chr6 (109-221)||(11612953-11613068)
chr6 (144-220)||(14509910-14509986)
chr6 (109-222)||(33686694-33686808)
chr6 (109-220)||(17914525-17914638)
chr6 (123-215)||(22610449-22610543)
chr6 (109-205)||(17600328-17600423)
chr6 (109-211)||(12689911-12690014)
chr6 (109-200)||(12797832-12797929)
chr6 (115-188)||(22694439-22694514)
[»] chr3 (22 HSPs)
chr3 (109-221)||(20520893-20521007)
chr3 (111-221)||(55432159-55432269)
chr3 (109-221)||(14437740-14437854)
chr3 (109-216)||(7570265-7570374)
chr3 (109-216)||(18472943-18473052)
chr3 (109-216)||(27709868-27709974)
chr3 (111-216)||(55326714-55326821)
chr3 (124-216)||(39774890-39774984)
chr3 (109-216)||(23660539-23660648)
chr3 (109-216)||(23665171-23665280)
chr3 (109-216)||(757414-757522)
chr3 (109-216)||(12964934-12965043)
chr3 (111-221)||(12970860-12970974)
chr3 (137-216)||(18468149-18468228)
chr3 (109-221)||(46964945-46965058)
chr3 (119-221)||(12111650-12111749)
chr3 (109-225)||(7860633-7860754)
chr3 (109-178)||(20175368-20175436)
chr3 (114-223)||(29351156-29351268)
chr3 (119-214)||(3656317-3656414)
chr3 (109-176)||(2206881-2206946)
chr3 (190-221)||(3419925-3419956)
[»] chr1 (19 HSPs)
chr1 (119-221)||(16648690-16648794)
chr1 (109-216)||(10136262-10136371)
chr1 (119-220)||(19798055-19798158)
chr1 (109-203)||(39199817-39199917)
chr1 (109-217)||(12260912-12261021)
chr1 (109-216)||(25844693-25844802)
chr1 (109-223)||(39586131-39586245)
chr1 (109-207)||(38622135-38622235)
chr1 (111-216)||(51040573-51040680)
chr1 (147-216)||(10141030-10141099)
chr1 (109-221)||(11807151-11807265)
chr1 (109-223)||(16036535-16036652)
chr1 (121-216)||(26926780-26926879)
chr1 (142-221)||(47450278-47450357)
chr1 (5-51)||(39199714-39199760)
chr1 (175-221)||(33300379-33300425)
chr1 (124-214)||(23191902-23191994)
chr1 (173-217)||(46697271-46697315)
chr1 (193-221)||(8138565-8138593)
[»] chr7 (20 HSPs)
chr7 (109-221)||(12256954-12257067)
chr7 (109-221)||(42625628-42625747)
chr7 (109-217)||(12181802-12181912)
chr7 (138-221)||(12800322-12800405)
chr7 (128-221)||(16373280-16373373)
chr7 (111-216)||(26342144-26342251)
chr7 (121-221)||(21672137-21672239)
chr7 (109-216)||(4931160-4931269)
chr7 (123-221)||(6590079-6590177)
chr7 (117-221)||(27246606-27246710)
chr7 (119-221)||(3046506-3046610)
chr7 (109-220)||(3880901-3881017)
chr7 (125-223)||(9814941-9815042)
chr7 (125-223)||(10716866-10716967)
chr7 (149-221)||(8269232-8269304)
chr7 (109-217)||(13313364-13313474)
chr7 (109-223)||(10392139-10392256)
chr7 (111-223)||(26286210-26286325)
chr7 (119-200)||(23247618-23247701)
chr7 (166-219)||(23152177-23152230)
[»] scaffold0690 (1 HSPs)
scaffold0690 (109-221)||(6164-6278)
[»] scaffold0240 (1 HSPs)
scaffold0240 (123-221)||(4903-5002)
[»] scaffold0054 (2 HSPs)
scaffold0054 (121-221)||(30109-30211)
scaffold0054 (109-181)||(26413-26487)
[»] scaffold0002 (2 HSPs)
scaffold0002 (109-216)||(5001-5110)
scaffold0002 (109-220)||(442990-443102)
[»] scaffold0352 (1 HSPs)
scaffold0352 (109-216)||(8045-8155)
[»] scaffold0057 (1 HSPs)
scaffold0057 (109-220)||(36055-36167)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 25496434 - 25496548
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||    
25496434 agagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaa 25496533  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
25496534 ttattatttttattc 25496548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 12797968 - 12797861
Alignment:
116 ggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattat 213  Q
    |||||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||    
12797968 ggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaattattat 12797869  T
214 ttttattc 221  Q
    ||||||||    
12797868 ttttattc 12797861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 19891568 - 19891664
Alignment:
120 gtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    |||||||||||||||||||||| |||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||||||||||||    
19891568 gtcccacataaaatagaacacacattattagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaattattatttt 19891664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 24537073 - 24537187
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||||||||||| ||||||||  ||| ||||||||||| | | ||||||| |||||||||||| |||| |||||||||||||||||    
24537073 agagtgtgggggtcccacataaaatataacacatacattagtagtgtttaaactacggtatttaattttaaatacttgataatgataaaaataatagtaa 24537172  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
24537173 ttattatttttattc 24537187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 25477339 - 25477453
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||  ||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||    
25477339 agagtgtggtggtcttacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaa 25477438  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
25477439 ttattatttttattc 25477453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 25637825 - 25637928
Alignment:
119 ggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttactttt-aaatacttaataacgataaaaataatagtaattattattttt 217  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||| ||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||    
25637825 ggtcccacataaaatagaacacacattagtagtgtttaaactgcggtatttaatttttaaatacttgataatgataaaaataatagtaattattattttt 25637924  T
218 attc 221  Q
    ||||    
25637925 attc 25637928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 29678712 - 29678610
Alignment:
121 tcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttta 218  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| ||||||||| || |||| |||||||||||||||||||||||||||||    
29678712 tcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatatttgataatgataaaaataatagtaattattattttta 29678613  T
219 ttc 221  Q
    |||    
29678612 ttc 29678610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 17968014 - 17968123
Alignment:
109 agagtgtggaggtcccacataaaatagaacaca--tattaatagtgtttaaattgcagtatttacttttaaatac-ttaataacgataaaaataatagta 205  Q
    ||||||||| |||||||||||||||||||||||  ||||| ||||||||||||||  ||||||| |||||||||| || |||| ||||||||||||||||    
17968014 agagtgtgg-ggtcccacataaaatagaacacacatattagtagtgtttaaattgtggtatttaattttaaatactttgataatgataaaaataatagta 17968112  T
206 attattatttt 216  Q
    |||||||||||    
17968113 attattatttt 17968123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 34495186 - 34495265
Alignment:
137 acacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||    
34495186 acacatattattagtgtttaaattgcagtatttaattttaaatacttgataatgataaaaataatagtcattattatttt 34495265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 9179778 - 9179886
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| ||| |||||||| |||| |||||||||||||||||    
9179778 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattt-aaatacttgataatgataaaaataatagtaa 9179876  T
207 ttattatttt 216  Q
    ||||||||||    
9179877 ttattatttt 9179886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 9184469 - 9184577
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| ||| |||||||| |||| |||||||||||||||||    
9184469 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattt-aaatacttgataatgataaaaataatagtaa 9184567  T
207 ttattatttt 216  Q
    ||||||||||    
9184568 ttattatttt 9184577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 30651960 - 30651851
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
30651960 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 30651861  T
207 ttattatttt 216  Q
    ||||||||||    
30651860 ttattatttt 30651851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 40846632 - 40846745
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| | ||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| ||||  ||||||||||||||||    
40846632 agagtgtggggatcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataataataaaaataatagtaa 40846731  T
207 ttattatttttatt 220  Q
    || |||||||||||    
40846732 tttttatttttatt 40846745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 19896994 - 19896903
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataa 200  Q
    |||| |||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||| || |||| |||||||||||    
19896994 agagcgtgggggtcccacataaaatagaacacacattagtagtgtttaaattgcggtatttaattttaaatatttgataatgataaaaataa 19896903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 42925726 - 42925841
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||||| |   |||||| |||||||||| | |||| ||| ||||||||| |||||    
42925726 agagtgtggaggtcccacgtaaaatagaacacacattagtagtgtttaaatagtgatatttaattttaaatacctgataatgatgaaaataataataatt 42925825  T
209 attatt-tttattcat 223  Q
    |||||| |||||||||    
42925826 attattatttattcat 42925841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 12361279 - 12361191
Alignment:
123 ccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattatt 211  Q
    ||||||||||||||| ||| |||| ||||||||||||||  ||||||| ||||||||| || |||| ||||||||||||||||||||||    
12361279 ccacataaaatagaagacacattagtagtgtttaaattgtggtatttaattttaaataattgataatgataaaaataatagtaattatt 12361191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 18345462 - 18345372
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaa 197  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| ||||||||||||||||| ||||||||    
18345462 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttaataatgataaaaa 18345372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 17974411 - 17974510
Alignment:
120 gtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatac-ttaataacgataaaaataatagtaattattatttt 216  Q
    |||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||| || |||| |||||||||||| ||||||||||||||    
17974411 gtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatactttgataatgataaaaataattgtaattattatttt 17974510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 32080423 - 32080307
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtattt-acttttaaatacttaataacgataaaaataatagta 205  Q
    ||||| |||||||||||||||||||||||  |||||||||||||| |||| |||    ||||| | |||||| ||| | |||| ||||||||||||||||    
32080423 agagtttggaggtcccacataaaatagaacacacatattaatagtatttatattatgatatttaatttttaagtacctgataatgataaaaataatagta 32080324  T
206 attattatttttattca 222  Q
    |||||| ||||||||||    
32080323 attattttttttattca 32080307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 15446342 - 15446443
Alignment:
119 ggtcccacataaaatagaacacat--attaatagtgtttaaattgcagtattt-acttttaaatacttaataacgataaaaataatagtaattattattt 215  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||  |||||| | |||||||||||| |||| | ||||| || || ||||||||||||    
15446342 ggtcccacataaaatagaacacatacattagtagtgtttaaattgtggtatttaatttttaaatacttgataatggtaaaagtagtaataattattattt 15446441  T
216 tt 217  Q
    ||    
15446442 tt 15446443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 1934098 - 1934150
Alignment:
164 gtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||| |||||||||||| |||  |||||||||||||||||||||||||||    
1934098 gtatttaattttaaatacttgatagtgataaaaataatagtaattattatttt 1934150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 31329108 - 31328991
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||||||||||| |||||||||||  |||  ||| |||||||||||| |  ||||||| |||||||||| | |||| ||| ||||| ||  | |    
31329108 agagtgtggaggtcccacgtaaaatagaacaaacacgttagtagtgtttaaatagtggtatttaattttaaatacatgataatgatgaaaattattatta 31329009  T
207 ttattatt-tttattcat 223  Q
    |||||||| |||||||||    
31329008 ttattattctttattcat 31328991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 31335829 - 31335712
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||||||||||| |||||||||||  |||  ||| |||||||||||| |  ||||||| |||||||||| | |||| ||| ||||| ||  | |    
31335829 agagtgtggaggtcccacgtaaaatagaacaaacacgttagtagtgtttaaatagtggtatttaattttaaatacatgataatgatgaaaattattatta 31335730  T
207 ttattatt-tttattcat 223  Q
    |||||||| |||||||||    
31335729 ttattattctttattcat 31335712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 28604122 - 28604022
Alignment:
119 ggtcccacataaaataga--acacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||  ||||| ||||  ||||||||||| |   |||||| |||||||||| | |||| ||| ||||||||| |||| ||||||||    
28604122 ggtcccacataaaatagattacacagattatcagtgtttaaatagtgatatttaattttaaatacatgataatgatgaaaataataataataattatttt 28604023  T
217 t 217  Q
    |    
28604022 t 28604022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 12002033 - 12002069
Alignment:
185 ataacgataaaaataatagtaattattatttttattc 221  Q
    |||| ||||||||||||||||||||||||||||||||    
12002033 ataatgataaaaataatagtaattattatttttattc 12002069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 44630504 - 44630605
Alignment:
115 tggaggtcccacataaaataga--acacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattatta 212  Q
    ||||||||||||||||||||||  ||||| |||| || ||||||||| |  || |||| |||||||||| | |||| ||||| ||||||  | |||||||    
44630504 tggaggtcccacataaaatagaacacacacattagtattgtttaaatagtggtgtttaattttaaatacctgataatgataataataattattattatta 44630603  T
213 tt 214  Q
    ||    
44630604 tt 44630605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 1934059 - 1934091
Alignment:
109 agagtgtggaggtcccacataaaatagaacaca 141  Q
    |||||| ||||||||||||||||||||||||||    
1934059 agagtggggaggtcccacataaaatagaacaca 1934091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 28559166 - 28559281
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| ||||||||| || |||| |||||||||||||||||    
28559166 agagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatatttgataatgataaaaataatagtaa 28559265  T
207 ttattatttttattca 222  Q
    ||||||||||||||||    
28559266 ttattatttttattca 28559281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 44924971 - 44925085
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||| |||||||||||||||||||||||  |||| |||| ||||||||||||||| ||||||| |||||||||||| |||| ||||||||||| |||||    
44924971 agagtttggaggtcccacataaaatagaaaacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataacagtaa 44925070  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
44925071 ttattatttttattc 44925085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 15950622 - 15950739
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatact---taataacgataaaaataatag 203  Q
    ||||||||||||| ||||||||||||||||||| |  ||||||||||||||||||| ||||||| |||||||||||   |||| | ||||||||||||||    
15950622 agagtgtggaggtgccacataaaatagaacacacacattaatagtgtttaaattgcggtatttaattttaaatacttgataatgatgataaaaataatag 15950721  T
204 taattattatttttattc 221  Q
    ||||||||||||||||||    
15950722 taattattatttttattc 15950739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 38181343 - 38181446
Alignment:
120 gtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttt 217  Q
    |||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
38181343 gtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaattattattttt 38181442  T
218 attc 221  Q
    ||||    
38181443 attc 38181446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 2966631 - 2966517
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||  ||||||| ||||||||||||||| |  ||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||    
2966631 agagtgtgagggtcccatataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttaataatgataaaaattatagtaa 2966532  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
2966531 ttattatttttattc 2966517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 26780150 - 26780036
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||  |||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| |||||||| ||||||||    
26780150 agagtgtgggtgtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaacaatagtaa 26780051  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
26780050 ttattatttttattc 26780036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 28564347 - 28564460
Alignment:
111 agtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||||||| ||||||||||||||||||| |  ||| ||||||||||||| | ||||||| ||||||||| || |||| |||||||||||||||||||    
28564347 agtgtggaggttccacataaaatagaacacacacattagtagtgtttaaattacggtatttaattttaaatatttgataatgataaaaataatagtaatt 28564446  T
209 attatttttattca 222  Q
    ||||||||||||||    
28564447 attatttttattca 28564460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 18875445 - 18875549
Alignment:
119 ggtcccacataaaatagaacaca--tattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||| |||||||||||  ||||| ||||||||||||||| ||||||| |||||||||||| |||| |||| ||||||||||||||||| ||||    
18875445 ggtcccacatacaatagaacacacatattagtagtgtttaaattgcggtatttaattttaaatacttgataatgatacaaataatagtaattattgtttt 18875544  T
217 tattc 221  Q
    |||||    
18875545 tattc 18875549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 40124944 - 40125053
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
40124944 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 40125043  T
207 ttattatttt 216  Q
    ||||||||||    
40125044 ttattatttt 40125053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 1808487 - 1808384
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||| ||||||||||||||| |  |||  |||||||||||||| ||||||| ||||||||| || |||| |||||||||||||||||||||||||||    
1808487 ggtcccatataaaatagaacacacacattagaagtgtttaaattgcggtatttaattttaaatatttgataatgataaaaataatagtaattattatttt 1808388  T
217 tatt 220  Q
    ||||    
1808387 tatt 1808384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 23547671 - 23547770
Alignment:
119 ggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttta 218  Q
    |||| |||||||| ||||||||||||||||     ||||||||| ||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||    
23547671 ggtctcacataaattagaacacatattaat-----ttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaattattgttttta 23547765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 33417566 - 33417467
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    |||| |||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||||||||||||    
33417566 ggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaattattatttt 33417467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 33100624 - 33100541
Alignment:
118 aggtcccacataaaatagaacacatattaatagtgtttaaattgcagtattt-acttttaaatacttaataacgataaaaataa 200  Q
    |||||||||||||||||||| ||| ||||||| | ||||||||||||||||| | |||||||||||| |||| ||||| |||||    
33100624 aggtcccacataaaatagaatacacattaataatctttaaattgcagtatttaatttttaaatacttgataatgataacaataa 33100541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 1909997 - 1910112
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgat-aaaaataatagta 205  Q
    |||||||||| ||||||||| ||||||| |  ||| |||| |||||||||||  |  ||||||| |||||||||||| |||| ||| |||||||||||||    
1909997 agagtgtggatgtcccacatgaaatagagctcacacattagtagtgtttaaacagtggtatttaattttaaatacttgataatgataaaaaataatagta 1910096  T
206 attattatttttattc 221  Q
    |||  |||||||||||    
1910097 attgctatttttattc 1910112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 24672374 - 24672483
Alignment:
114 gtggaggtcccacataaaatagaacac--atattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattatt 211  Q
    |||| ||||||| |||||||||| |||  | || ||||||||||||||||   |||||| || |||||||||||||| |||| |||||||| | || |||    
24672374 gtgggggtcccaaataaaatagagcacgcagatcaatagtgtttaaattgtgatatttaattgtaaatacttaataatgatagaaataataattatgatt 24672473  T
212 atttttattc 221  Q
    ||||||||||    
24672474 atttttattc 24672483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 17027130 - 17027073
Alignment:
164 gtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    ||||||| |||||||||||| ||||  |||||||||||| ||||||||||||||||||    
17027130 gtatttaattttaaatacttgataatcataaaaataatactaattattatttttattc 17027073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 17557622 - 17557565
Alignment:
164 gtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    ||||||| |||||||||||| ||||  |||||||||||| ||||||||||||||||||    
17557622 gtatttaattttaaatacttgataatcataaaaataatactaattattatttttattc 17557565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 5884939 - 5884889
Alignment:
111 agtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattg 161  Q
    ||||| ||||| |||||| |||||||||||| |||||||||||||||||||    
5884939 agtgtagaggttccacatgaaatagaacacacattaatagtgtttaaattg 5884889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 17021301 - 17021247
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgc 162  Q
    ||||||||| |||||||||||||||||||  |||| |||| |||||||||||||||    
17021301 agagtgtgg-ggtcccacataaaatagaacacacacattagtagtgtttaaattgc 17021247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 17551738 - 17551684
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgc 162  Q
    ||||||||| |||||||||||||||||||  |||| |||| |||||||||||||||    
17551738 agagtgtgg-ggtcccacataaaatagaacacacacattagtagtgtttaaattgc 17551684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 22714116 - 22714164
Alignment:
175 taaatacttaataacgataaaaataatagtaattattatttttattcat 223  Q
    ||||||||  |||| |||| || ||||||||||||||||||||||||||    
22714116 taaatactagataatgatacaagtaatagtaattattatttttattcat 22714164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 10759411 - 10759525
Alignment:
109 agagtgtggaggtcccacataaaatagaaca--catattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||| | |||||||||||||||||||||  || |||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||    
10759411 agagtgtaggggtcccacataaaatagaacagacacattagtagtgtttaaattgcagtatttaattttaaatacttgataatgataaaaataatagtaa 10759510  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
10759511 ttattatttttattc 10759525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 6154482 - 6154596
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
6154482 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 6154581  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
6154582 ttattatttttattc 6154596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 26668324 - 26668215
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
26668324 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 26668225  T
207 ttattatttt 216  Q
    ||||||||||    
26668224 ttattatttt 26668215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 26939921 - 26939812
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
26939921 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 26939822  T
207 ttattatttt 216  Q
    ||||||||||    
26939821 ttattatttt 26939812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 37247849 - 37247962
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
37247849 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 37247948  T
207 ttattatttttatt 220  Q
    ||||||||||||||    
37247949 ttattatttttatt 37247962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 37646105 - 37646216
Alignment:
109 agagtgtggaggtcccacataaaatagaacaca----tattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagt 204  Q
    ||||||||| |||||||||||||||||||||||    ||||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||    
37646105 agagtgtgggggtcccacataaaatagaacacacacatattattagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagt 37646204  T
205 aattattatttt 216  Q
    ||||||||||||    
37646205 aattattatttt 37646216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 12104100 - 12103986
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||| |||| ||||||||||||||| ||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||     
12104100 agagagtgggggtcccacataaaatggaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtag 12104001  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
12104000 ttattatttttattc 12103986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 37536987 - 37537097
Alignment:
109 agagtgtggaggtcccacataaaatagaacaca----tattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagt 204  Q
    ||||||||| |||||||||||||||||||||||    ||||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||    
37536987 agagtgtgg-ggtcccacataaaatagaacacacacatattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagt 37537085  T
205 aattattatttt 216  Q
    ||||||||||||    
37537086 aattattatttt 37537097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 7452801 - 7452691
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaa-taatagta 205  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||| ||||||||    
7452801 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaattaatagta 7452702  T
206 attattatttt 216  Q
    |||||||||||    
7452701 attattatttt 7452691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 29167023 - 29167132
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||  ||||| ||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||| ||||||||    
29167023 agagtgtgagggtcctacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaacaatagtaa 29167122  T
207 ttattatttt 216  Q
    ||||||||||    
29167123 ttattatttt 29167132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 36430564 - 36430459
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| |||||||||||||   ||||||| ||||||||| ||  ||| |||||||||||||||||    
36430564 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattatggtatttaattttaaatatttggtaatgataaaaataatagtaa 36430465  T
207 ttatta 212  Q
    ||||||    
36430464 ttatta 36430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 20180216 - 20180314
Alignment:
122 cccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttat 219  Q
    |||||||||||||||||||| |  ||| ||||||||||||| | ||||||| ||||||||   | |||| ||||||||||||||||||||||||||||||    
20180216 cccacataaaatagaacacacacattagtagtgtttaaattacggtatttaattttaaat---tgataatgataaaaataatagtaattattatttttat 20180312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 40148879 - 40148797
Alignment:
119 ggtcccacataaaatagaaca--catattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaata 199  Q
    |||||||||||||||||||||  || |||| ||||||||||||||| ||||||| |||||||||||| |||| ||||||||||    
40148879 ggtcccacataaaatagaacaaacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaata 40148797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 36424684 - 36424579
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||| |||||||||||||||||| |  ||| ||||| ||||||||  ||||||| ||||||||||||  ||| ||||||||||||| |||    
36424684 agagtgtgggggtctcacataaaatagaacacacacattagtagtgcttaaattgtggtatttaattttaaatacttggtaatgataaaaataatattaa 36424585  T
207 ttatta 212  Q
    ||||||    
36424584 ttatta 36424579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 17162892 - 17162787
Alignment:
120 gtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttactttt-aaatacttaataacgataaaaataatagtaattattatttt 216  Q
    |||||||||||||||||||||| |  ||| | ||||||||||||  ||||||| |||| |||||| | |||| |||||||||||||||||| ||| ||||    
17162892 gtcccacataaaatagaacacacacattagtggtgtttaaattgaggtatttaatttttaaatacctgataatgataaaaataatagtaatgattttttt 17162793  T
217 tattca 222  Q
    ||||||    
17162792 tattca 17162787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 17159412 - 17159312
Alignment:
120 gtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtatttactttt-aaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||  |||| |||| |||||||| |||||  ||||||| |||| |||||| | |||| |||||||||||||||||| ||||||||    
17159412 gtcccacataaaatagaagacacacattagtagtgttttaattgaggtatttaatttttaaatacctgataatgataaaaataatagtaatgattatttt 17159313  T
217 t 217  Q
    |    
17159312 t 17159312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 6511655 - 6511726
Alignment:
111 agtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaata 180  Q
    |||||||  |||||||||||||||||||  ||| |||| ||||||||||||||||||||||| |||||||||    
6511655 agtgtgggagtcccacataaaatagaactcacacattagtagtgtttaaattgcagtatttaattttaaata 6511726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 6511744 - 6511792
Alignment:
172 ttttaaatacttaataacgataaaaataatagtaattattatttttatt 220  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||    
6511744 ttttaaatacttgataatgataaaaataatagtaattattatttttatt 6511792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 23689116 - 23689009
Alignment:
110 gagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaat 207  Q
    |||||||| | ||||||||||||||||||||| |  ||  ||||||| ||||||  ||||||| |||||||||| | |||| | ||||||||||||||||    
23689116 gagtgtggggatcccacataaaatagaacacacacattcgtagtgttaaaattgtggtatttaattttaaataccttataatggtaaaaataatagtaat 23689017  T
208 tattattt 215  Q
    ||| ||||    
23689016 tataattt 23689009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 15149692 - 15149601
Alignment:
127 ataaaatagaacacatattaatagtgtttaaattgcagtattt-acttttaaatacttaataacgataaaaataatagtaattattattttt 217  Q
    ||||||||||||||| ||||||||||||||||||    ||||| | ||||| |||  | |||| ||||||||||||||||||||||||||||    
15149692 ataaaatagaacacacattaatagtgtttaaattaagatatttaatttttagatatctgataatgataaaaataatagtaattattattttt 15149601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 39519394 - 39519332
Alignment:
154 ttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||  ||||||| |||||||||||| |||  |||||||||||||||||||||||||||    
39519394 ttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaattattatttt 39519332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 39524033 - 39523971
Alignment:
154 ttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||  ||||||| |||||||||||| |||  |||||||||||||||||||||||||||    
39524033 ttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaattattatttt 39523971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 35678959 - 35679058
Alignment:
120 gtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttt 217  Q
    |||||||||||||||||||||| |  ||| |||||||||||| |  ||||||  |||||||||| | |||| |||  |||||||| | ||||||||||||    
35678959 gtcccacataaaatagaacacacacattagtagtgtttaaatagtggtattttattttaaatacctgataatgatgcaaataataattattattattttt 35679058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 22832636 - 22832679
Alignment:
174 ttaaatacttaataacgataaaaataatagtaattattattttt 217  Q
    |||||||||| |||| | ||||||||||||||||||||||||||    
22832636 ttaaatacttgataatgttaaaaataatagtaattattattttt 22832679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 40567656 - 40567754
Alignment:
113 tgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatta 209  Q
    ||||| ||| ||| |||||||| |||||| |  ||| ||||| ||||||||  ||||||| |||||||||  | |||| ||||||||||||||||||||    
40567656 tgtgggggtaccatataaaataaaacacacacgttagtagtgattaaattgtggtatttaattttaaatatcttataatgataaaaataatagtaatta 40567754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 9725824 - 9725856
Alignment:
109 agagtgtggaggtcccacataaaatagaacaca 141  Q
    |||||||||| ||||||||||||||||||||||    
9725824 agagtgtggatgtcccacataaaatagaacaca 9725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 13064860 - 13064974
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  | ||||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||    
13064860 agagtgtgggggtcccacataaaatagaacacacacatcaatagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaa 13064959  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
13064960 ttattatttttattc 13064974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 16422092 - 16421978
Alignment:
109 agagtgtggaggtcccacataaaatagaacacat--attaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||||||||||||||||||   |||| ||||||||||||||| ||||||| |||| ||||||| |||| |||||||||||||||||    
16422092 agagtgtgggggtcccacataaaatagaacacacgcattagtagtgtttaaattgcggtatttaattttcaatacttgataatgataaaaataatagtaa 16421993  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
16421992 ttattatttttattc 16421978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 55252690 - 55252577
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||| ||    
55252690 agagtgtggtggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagcaa 55252591  T
207 ttattatttttatt 220  Q
    ||||||||||||||    
55252590 ttattatttttatt 55252577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 33462407 - 33462515
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||||||||||||| ||||||||  ||||| |||| |||||||||||||||||| |||| |||||||||||| |||| |||||||||||||||||||    
33462407 agagtgtggaggtccca-ataaaataagacacacattagtagtgtttaaattgcagtgtttaattttaaatacttgataatgataaaaataatagtaatt 33462505  T
209 attattttta 218  Q
    ||||||||||    
33462506 attattttta 33462515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 12822960 - 12823074
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||  ||| |||| ||||||||||| ||  ||||||| |||||||||||| |||| |||||||||||||||||    
12822960 agagtgtgggggtcccacataaaatagaactcacacattagtagtgtttaaactgtggtatttaattttaaatactttataatgataaaaataatagtaa 12823059  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
12823060 ttattatttttattc 12823074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 33468064 - 33468195
Alignment:
121 tcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttta 218  Q
    ||||||||||||||||||||| |  ||| |||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
33468064 tcccacataaaatagaacacacacattagtagtgtttaaattgtagtatttaattttaaatacttgataatgataaaaataatagtaattattattttta 33468163  T
219 ----ttca-ttcccataaatttagcttatggt 245  Q
         ||| |||||||||||||||||||||||    
33468164 gaatatcacttcccataaatttagcttatggt 33468195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 2820838 - 2820725
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||| || || |||| |||||||||||||||||    
2820838 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaattatttgataatgataaaaataatagtaa 2820739  T
207 ttattatttttatt 220  Q
    ||||||||||||||    
2820738 ttattatttttatt 2820725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 8694759 - 8694650
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
8694759 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 8694660  T
207 ttattatttt 216  Q
    ||||||||||    
8694659 ttattatttt 8694650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 32081215 - 32081329
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||||||||||| |||||||||||  ||| |||| ||||||||||||||   |||||| |||||||||||| ||||  ||||||||||||||||    
32081215 agagtgtggaggtcccacgtaaaatagaactcacacattagtagtgtttaaattgtgatatttaattttaaatacttgataattataaaaataatagtaa 32081314  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
32081315 ttattatttttattc 32081329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 32220614 - 32220728
Alignment:
109 agagtgtggaggtcccacataaaatagaaca--catattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||||||||||||||||  || |||| ||||||||||||| |  |||||| ||||||||| || |||| |||||||||||||||||    
32220614 agagtgtgggggtcccacataaaatagaacatacacattattagtgtttaaattccgatatttaattttaaatatttgataatgataaaaataatagtaa 32220713  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
32220714 ttattatttttattc 32220728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 31728416 - 31728524
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
31728416 agagtgtgg-ggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttcataatgataaaaataatagtaa 31728514  T
207 ttattatttt 216  Q
    ||||||||||    
31728515 ttattatttt 31728524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 37258913 - 37259022
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
37258913 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 37259012  T
207 ttattatttt 216  Q
    ||||||||||    
37259013 ttattatttt 37259022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 37263613 - 37263722
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
37263613 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 37263712  T
207 ttattatttt 216  Q
    ||||||||||    
37263713 ttattatttt 37263722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 19107624 - 19107510
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||||||||||||||||||||||||| |  ||| |||||||||||| |  ||||||| |||||||||| | |||| ||| ||||||||| |||    
19107624 agagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaatagtggtatttaattttaaatacctgataatgatgaaaataataataa 19107525  T
207 ttattatttttattc 221  Q
    |||||||| ||||||    
19107524 ttattattcttattc 19107510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 5925857 - 5925943
Alignment:
119 ggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagta 205  Q
    ||||||||||||||||||||||| |||| |||||||||||||   ||||||| |||||||||||| |||| ||||||||||||||||    
5925857 ggtcccacataaaatagaacacacattagtagtgtttaaattatggtatttaattttaaatacttgataatgataaaaataatagta 5925943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 13060512 - 13060399
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||| ||||||||| |||||  ||| |||  ||||||||||||||| ||||||| |||||||||||| |||| ||||| |||||||||||    
13060512 agagtgtggtggtcacacataaaaaagaactcacacattggtagtgtttaaattgcggtatttaattttaaatacttgataatgataacaataatagtaa 13060413  T
207 ttattatttttatt 220  Q
    || |||||||||||    
13060412 ttcttatttttatt 13060399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 27183269 - 27183183
Alignment:
119 ggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagta 205  Q
    ||||||||||||||||||||||| |||| |||||||||||||   ||||||| |||||||||||| |||| ||||||||||||||||    
27183269 ggtcccacataaaatagaacacacattagtagtgtttaaattatggtatttaattttaaatacttgataatgataaaaataatagta 27183183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 31274560 - 31274451
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| | |  |||||||||||||||||    
31274560 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgacagtgataaaaataatagtaa 31274461  T
207 ttattatttt 216  Q
    ||||||||||    
31274460 ttattatttt 31274451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 51698975 - 51698863
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgat--aaaaataatagt 204  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||| ||| |||| |||  ||||| ||||||    
51698975 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatgcttgataatgataaaaaaaaaatagt 51698876  T
205 aattattattttt 217  Q
    |||||||||||||    
51698875 aattattattttt 51698863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 19103012 - 19102905
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||| |   |||||| |||||||||| | |||| ||| ||||||||| |||    
19103012 agagtgtggaggtcccacataaaatagaacacacacattaatagtgtttaaatagtgatatttaattttaaatacctgataatgatgaaaataataataa 19102913  T
207 ttattatt 214  Q
    ||||||||    
19102912 ttattatt 19102905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 31766914 - 31766809
Alignment:
113 tgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttactttt-aaatacttaataacgataaaaataatagtaatta 209  Q
    ||||| ||||||||||||||||||||||| |  ||||||||||| ||||||  ||||||| |||| |||||||| |||| ||||||||||||||||||||    
31766914 tgtgggggtcccacataaaatagaacacacacattaatagtgtt-aaattgtggtatttaatttttaaatacttgataatgataaaaataatagtaatta 31766816  T
210 ttatttt 216  Q
    |||||||    
31766815 ttatttt 31766809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 19907252 - 19907180
Alignment:
149 agtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    |||||||||||||| ||||||| |||||||||||| || | |||||||||||||| |||||||||||||||||    
19907252 agtgtttaaattgcggtatttaattttaaatacttgatgatgataaaaataatagaaattattatttttattc 19907180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 29349263 - 29349366
Alignment:
117 gaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgat-aaaaataatagtaattattat 213  Q
    ||||||||||||||||||||||  ||| ||||  |||||||||||||| ||||||| |||||||||||  |||| ||| |||||||||| ||||||||||    
29349263 gaggtcccacataaaatagaactcacacattagcagtgtttaaattgcggtatttaattttaaatactggataatgataaaaaataatattaattattat 29349362  T
214 tttt 217  Q
    ||||    
29349363 tttt 29349366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 5270482 - 5270582
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatactta-ataacgataaaaataatagtaattattattt 215  Q
    ||||||||||||||||||||||| |  ||| |||| |||||||||  ||||||| ||||||||||||  |||| |||||||||||||||| |||||||||    
5270482 ggtcccacataaaatagaacacacacattagtagtatttaaattgtggtatttaattttaaatactttgataatgataaaaataatagtagttattattt 5270581  T
216 t 216  Q
    |    
5270582 t 5270582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 23094141 - 23094042
Alignment:
123 ccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttatt 220  Q
    |||||||||||| |||||| |  ||| ||||| ||||||| |   ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||    
23094141 ccacataaaataaaacacacacattagtagtgattaaattacgagatttaattttaaatacttgataatgataaaaataatagtaattattatttttatt 23094042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 48275889 - 48276003
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||||| ||||| | |||||||| |||||| | ||  ||||||||||| |  ||||||| ||||||||||||||||| ||| ||||||||| |||||    
48275889 agagtgtgggggtcc-atataaaatataacacacactagcagtgtttaaatagtggtatttatttttaaatacttaataatgatgaaaataataataatt 48275987  T
209 attatt-tttattcat 223  Q
    |||||| |||||||||    
48275988 attattgtttattcat 48276003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 6943819 - 6943740
Alignment:
120 gtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaa 197  Q
    ||||||||||||||||||||||||  ||| || |||||||||||| ||||||| ||| |||||||| |||| ||||||||    
6943819 gtcccacataaaatagaacacatacattagtaatgtttaaattgctgtatttaatttcaaatacttgataatgataaaaa 6943740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 12875450 - 12875340
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||  |||||||||||||  ||| |||| || | ||||||| |  ||||||  ||||||||| || |||| |||||| ||||||||||    
12875450 agagtgtgggggtcctgcataaaatagaacccacacattagtaatatttaaatagtggtatttgattttaaatatttgataatgataaacataatagtaa 12875351  T
207 ttattattttt 217  Q
    |||||||||||    
12875350 ttattattttt 12875340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 40408975 - 40408896
Alignment:
127 ataaaatagaacaca--tattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagta 205  Q
    |||||||||||||||  ||||| ||||||||||||||| ||||||| ||||||||| || || | | ||||||||||||||    
40408975 ataaaatagaacacacatattattagtgtttaaattgcggtatttaattttaaatatttgat-atggtaaaaataatagta 40408896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 16949017 - 16948929
Alignment:
137 acacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaat-aatagtaattattatttttattcatt 224  Q
    |||||||||| ||||||| |||||   ||||||| |||| ||||||| |||| ||||||||  |||||||||||||| ||||| |||||    
16949017 acacatattagtagtgttcaaattcttgtatttagttttgaatacttgataatgataaaaaagaatagtaattattagttttactcatt 16948929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 8028215 - 8028292
Alignment:
126 cataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataat 201  Q
    |||||||||||||||| |  ||| |||||||||||| |  ||||||| |||||||||  |||||| ||||||||||||    
8028215 cataaaatagaacacacacattagtagtgtttaaatagttgtatttaattttaaataactaataatgataaaaataat 8028292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 28601617 - 28601560
Alignment:
165 tatttacttttaaatacttaataacgataaaaataatagtaattattatttttattca 222  Q
    |||||| ||||||||| ||| ||| ||||||||||||| |||| ||| ||||||||||    
28601617 tatttaattttaaatatttagtaatgataaaaataataataataattttttttattca 28601560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 39216233 - 39216262
Alignment:
192 taaaaataatagtaattattatttttattc 221  Q
    ||||||||||||||||||||||||||||||    
39216233 taaaaataatagtaattattatttttattc 39216262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 8029385 - 8029417
Alignment:
109 agagtgtggaggtcccacataaaatagaacaca 141  Q
    ||||||||| |||||||||||||||||||||||    
8029385 agagtgtgggggtcccacataaaatagaacaca 8029417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 20747347 - 20747461
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||| ||||||||||||||  ||| |||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||    
20747347 agagtgtgggggtcctacataaaatagaacttacacattagtagtgtttaaattgcggtatttaattttaaatacttgataacgataaaaacaatagtaa 20747446  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
20747447 ttattatttttattc 20747461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 16835212 - 16835325
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
16835212 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 16835311  T
207 ttattatttttatt 220  Q
    ||||||||||||||    
16835312 ttattatttttatt 16835325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 2699165 - 2699279
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||||||||||||||  |||| |||| ||||||||||||||| ||||||| |||||||||||  ||||  ||||||||||||||||    
2699165 agagtgtgggggtcccacataaaatagaattcacacattagtagtgtttaaattgcggtatttaattttaaatactagataataataaaaataatagtaa 2699264  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
2699265 ttattatttttattc 2699279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 19994434 - 19994548
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||| |||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| || | |||||||||||||||||    
19994434 agagtgtgggggtcccacgtaaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgattatgataaaaataatagtaa 19994533  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
19994534 ttattatttttattc 19994548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 11569742 - 11569855
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||   |||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||    
11569742 agagtgtgg-ggtcccacataaaatagaacacacacattggaagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaa 11569840  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
11569841 ttattatttttattc 11569855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 17963608 - 17963717
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
17963608 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 17963707  T
207 ttattatttt 216  Q
    || |||||||    
17963708 ttgttatttt 17963717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 25313523 - 25313639
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatat--taatagtgtttaaattgcagtatttacttttaaatacttaataacgat--aaaaataatagt 204  Q
    ||||||||  |||| |||||||||||||||||||||  || ||||||||||||||| ||||||| |||||||||||| |||| |||  ||||||||||||    
25313523 agagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaaaataatagt 25313622  T
205 aattattatttttattc 221  Q
    |||||||||||||||||    
25313623 aattattatttttattc 25313639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 26201017 - 26201133
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatat--taatagtgtttaaattgcagtatttacttttaaatacttaataacgat--aaaaataatagt 204  Q
    ||||||||  |||| |||||||||||||||||||||  || ||||||||||||||| ||||||| |||||||||||| |||| |||  ||||||||||||    
26201017 agagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaaaataatagt 26201116  T
205 aattattatttttattc 221  Q
    |||||||||||||||||    
26201117 aattattatttttattc 26201133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 11533761 - 11533865
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||||||| |  ||  ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||| ||||||||||||||    
11533761 ggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataattgtaattattatttt 11533860  T
217 tattc 221  Q
    |||||    
11533861 tattc 11533865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 11559271 - 11559375
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||||||| |  ||  ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||| ||||||||||||||    
11559271 ggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataattgtaattattatttt 11559370  T
217 tattc 221  Q
    |||||    
11559371 tattc 11559375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 6406910 - 6407019
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||  |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
6406910 agagtgtgggggtcctgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 6407009  T
207 ttattatttt 216  Q
    ||||||||||    
6407010 ttattatttt 6407019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 5857021 - 5856917
Alignment:
119 ggtcccacataaaatagaaca--catattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||| |||||||  || |||| ||||||||||||||| ||||||| ||||||||| || |||| ||||||||||||||||||| |||||||    
5857021 ggtcccacataaactagaacatacacattagtagtgtttaaattgcggtatttaattttaaataattgataatgataaaaataatagtaattgttatttt 5856922  T
217 tattc 221  Q
    |||||    
5856921 tattc 5856917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 12405410 - 12405524
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||| || || ||||||||||||||| |  ||| ||||| ||||||||  ||| ||| |||||||||||| |||| |||||||||||||||||    
12405410 agagtgtggagatcacaaataaaatagaacacacacattagtagtgattaaattgaggtacttaattttaaatacttgataatgataaaaataatagtaa 12405509  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
12405510 ttattatttttattc 12405524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 11612953 - 11613068
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||| |||||||||||||||||| |||||| |  ||| ||||||||||||| | ||||||| |||||||||||| |||| ||||||||||||||| |    
11612953 agagtgttgaggtcccacataaaataaaacacacacattagtagtgtttaaatttcggtatttaattttaaatacttgataatgataaaaataatagtga 11613052  T
207 tt-attatttttattc 221  Q
    || |||| ||||||||    
11613053 ttaattaattttattc 11613068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 14509986 - 14509910
Alignment:
144 ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttatt 220  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||  ||||||||||||||||||||| ||||||||    
14509986 ttaatagtgtttaaattgtggtatttaattttaaatacttaataataataaaaataatagtaattattttttttatt 14509910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 33686694 - 33686808
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||| |||||||||||| |||  ||| |||| ||||||||||| ||  ||||||| ||||||||||||  ||| |||||||||||||||||    
33686694 agagtgtgg-ggttccacataaaataaaacttacaaattagtagtgtttaaactgtggtatttagttttaaatacttggtaatgataaaaataatagtaa 33686792  T
207 ttattatttttattca 222  Q
    ||||||||||||||||    
33686793 ttattatttttattca 33686808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 17914638 - 17914525
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||| ||||||| ||||||||| ||||||| |  |||||||||||| |||| | ||||||| |||||||||| | || | |||||||||||||| ||    
17914638 agagtgttgaggtcctacataaaatggaacacacacattaatagtgttttaattacggtatttaattttaaatacctgatgatgataaaaataatagcaa 17914539  T
207 ttattatttttatt 220  Q
    ||||||||||||||    
17914538 ttattatttttatt 17914525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 22610543 - 22610449
Alignment:
123 ccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattt 215  Q
    |||||||||||| |||||| |  ||| |||||||||||||   ||||||| |||||||||||| |||| |||||||||||| |||||||||||||    
22610543 ccacataaaataaaacacacacattagtagtgtttaaattttggtatttaattttaaatacttgataatgataaaaataattgtaattattattt 22610449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 17600423 - 17600328
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagta 205  Q
    ||||||||  ||||||||||||||||||||||| |  | ||||||||||||||  ||||||| ||||||||| || |||| ||||||||||| ||||    
17600423 agagtgtgagggtcccacataaaatagaacacaaac-attagtgtttaaattgtggtatttaattttaaataattgataatgataaaaataacagta 17600328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 12690014 - 12689911
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||| ||||||||||||||||||||| |  ||| |||||||||||| || ||||||| |||||||||  | |||  ||| ||||||||| |||    
12690014 agagtgtggag-tcccacataaaatagaacacacacattagtagtgtttaaatagcggtatttaattttaaataactgatattgatgaaaataataataa 12689916  T
207 ttatt 211  Q
    |||||    
12689915 ttatt 12689911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 12797832 - 12797929
Alignment:
109 agagtgtggaggtcccacataaaatagaa------cacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataa 200  Q
    ||||||||  |||||||||||||||||||      |||| | || |||||||||||| |  ||||||| |||||||||||| | ||||||||||||||    
12797832 agagtgtgtgggtcccacataaaatagaaaacacacacacactagtagtgtttaaatagtggtatttaattttaaatacttgacaacgataaaaataa 12797929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 22694439 - 22694514
Alignment:
115 tggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataa 188  Q
    ||||||||||||||||||||||||||| |  |  | |||||||||||||| ||||||| || |||| |||| ||||    
22694439 tggaggtcccacataaaatagaacacacacatctagagtgtttaaattgccgtatttaattataaaaacttgataa 22694514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 20521007 - 20520893
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||||||||||||||  |||| |||| ||||||||||||||| |||||||  ||||||||||| |||| |||||||||||||||||    
20521007 agagtgtgggggtcccacataaaatagaatacacacattagtagtgtttaaattgcggtatttaactttaaatacttgataatgataaaaataatagtaa 20520908  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
20520907 ttattatttttattc 20520893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 55432269 - 55432159
Alignment:
111 agtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattat 210  Q
    ||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||| || |||| ||||||||| ||| |||||||    
55432269 agtgtgggggtcccacacaaaatagaacacacattagtagtgtttaaattgcagtatttaattttaaatatttgataatgataaaaattatattaattat 55432170  T
211 tatttttattc 221  Q
    |||||||||||    
55432169 tatttttattc 55432159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 14437740 - 14437854
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| ||||||||||||| |||    
14437740 agagtgtggaggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataataataa 14437839  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
14437840 ttattatttttattc 14437854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 7570265 - 7570374
Alignment:
109 agagtgtggaggtcccacataaaatagaacaca--tattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| ||||||||||||||||  ||||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
7570265 agagtgtgggggtcccgcataaaatagaacacacatattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 7570364  T
207 ttattatttt 216  Q
    ||||||||||    
7570365 ttattatttt 7570374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 18473052 - 18472943
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
18473052 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 18472953  T
207 ttattatttt 216  Q
    ||||||||||    
18472952 ttattatttt 18472943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 27709974 - 27709868
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||||| ||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||||    
27709974 agagtgtgg-ggtcccacataaaatagaacatacgttagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaatt 27709876  T
209 attatttt 216  Q
    ||||||||    
27709875 attatttt 27709868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 55326821 - 55326714
Alignment:
111 agtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||| ||    
55326821 agtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtagtt 55326722  T
209 attatttt 216  Q
    ||||||||    
55326721 attatttt 55326714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 39774890 - 39774984
Alignment:
124 cacataaaatagaacaca--tattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||  ||||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||||||||||||    
39774890 cacataaaatagaacacacatattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaattattatttt 39774984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 23660539 - 23660648
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||| |||||||||||||| |||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
23660539 agagtgtggagctcccacataaaataaaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 23660638  T
207 ttattatttt 216  Q
    ||||||||||    
23660639 ttattatttt 23660648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 23665171 - 23665280
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||||| ||||| ||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
23665171 agagtgtggagctcccatataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 23665270  T
207 ttattatttt 216  Q
    ||||||||||    
23665271 ttattatttt 23665280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 757414 - 757522
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||| |||||||||||||||||| |  ||| ||||||||||||||  ||||||| ||| |||||||| |||| |||||||||||||||||    
757414 agagtgtgggggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattt-aaatacttgataatgataaaaataatagtaa 757512  T
207 ttattatttt 216  Q
    ||||||||||    
757513 ttattatttt 757522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 12964934 - 12965043
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaa-tacttaataacgataaaaataatagta 205  Q
    ||||||||| |||||||||||||||| |||||| |  ||| ||||||||||||||| ||||||| ||||||| || || |||| ||||||||||||||||    
12964934 agagtgtggtggtcccacataaaata-aacacaaactttagtagtgtttaaattgcggtatttaattttaaaatatttgataatgataaaaataatagta 12965032  T
206 attattatttt 216  Q
    |||||||||||    
12965033 attattatttt 12965043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 12970860 - 12970974
Alignment:
111 agtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaa-tacttaataacgataaaa-ataatagtaa 206  Q
    ||||||| | ||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| ||||||| ||||  |||| ||||||| ||||||||||    
12970860 agtgtggtgatcccacataaaatagaacacacactttagtagtgtttaaattgcggtatttaattttaaaatactggataatgataaaaaataatagtaa 12970959  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
12970960 ttattatttttattc 12970974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 18468228 - 18468149
Alignment:
137 acacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||| |||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||||||||||||    
18468228 acacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaattattatttt 18468149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 46965058 - 46964945
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||  || |||||||||||||||||  ||| |||| ||||||||||| ||| ||||||| |||||||||||| |||| ||||||||||||| |||    
46965058 agagtgtgagggccccacataaaatagaactcacacatta-tagtgtttaaactgcggtatttaattttaaatacttgataatgataaaaataataataa 46964960  T
207 ttattatttttattc 221  Q
    | |||||||||||||    
46964959 taattatttttattc 46964945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 12111650 - 12111749
Alignment:
119 ggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttta 218  Q
    |||| ||||||||||||||||||   ||||   ||||||||| | ||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||    
12111650 ggtctcacataaaatagaacacaccgtaat---gtttaaatttcggtatttaattttaaatgcttgataatgataaaaataatagtaattattattttta 12111746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 7860754 - 7860633
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtattt-acttttaaatacttaataacgat-aaaaataatagt 204  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||||||||   |||||| | |||||||||  | |||| ||| ||||| ||||||    
7860754 agagtgtggaggtcccacataaaatagaacacacacattaatagtgtttaaattatggtatttaatttttaaatatcttataatgataaaaaaaaatagt 7860655  T
205 aattatta-tttttattcattc 225  Q
    | |||||| |||||||||||||    
7860654 atttattattttttattcattc 7860633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 20175436 - 20175368
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaa 178  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||    
20175436 agagtgtgg-ggttccacataaaatagaacacacattagtagtatttaaattgcagtatttaattttaaa 20175368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 29351268 - 29351156
Alignment:
114 gtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattatt 211  Q
    ||||||||||||||||||||| |||||| |  ||| |||||||||||| |  ||||||| |||||||||  | |||| ||| ||||||||| ||||||||    
29351268 gtggaggtcccacataaaataaaacacacacattattagtgtttaaatagtggtatttaattttaaatatctgataatgatgaaaataataataattatt 29351169  T
212 att-tttattcat 223  Q
    ||| |||||||||    
29351168 attctttattcat 29351156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 3656317 - 3656414
Alignment:
119 ggtcccacataaaatagaacac--atattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatt 214  Q
    ||||||||||||||||||||||  | |||| |||||||||||| |  ||||||| |||||||||| | |||| ||| ||||||||| | |||||||||    
3656317 ggtcccacataaaatagaacacggacattagtagtgtttaaatagtggtatttaattttaaatacctgataatgatgaaaataataattattattatt 3656414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 2206881 - 2206946
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttactttta 176  Q
    ||||||||| || |||||||||||||||||||  || | |||||||||||| |||||||||| |||||    
2206881 agagtgtgggggacccacataaaatagaacac--atcagtagtgtttaaatagcagtatttaatttta 2206946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 221
Target Start/End: Complemental strand, 3419956 - 3419925
Alignment:
190 gataaaaataatagtaattattatttttattc 221  Q
    ||||||||||||||||||||||||||||||||    
3419956 gataaaaataatagtaattattatttttattc 3419925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 16648690 - 16648794
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||||||||||||    
16648690 ggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaattattatttt 16648789  T
217 tattc 221  Q
    |||||    
16648790 tattc 16648794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 10136371 - 10136262
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
10136371 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 10136272  T
207 ttattatttt 216  Q
    ||||||||||    
10136271 ttattatttt 10136262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 19798055 - 19798158
Alignment:
119 ggtcccacataaaatagaacac--atattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    |||||||||||||||||||| |  |||||| ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||| ||||||||    
19798055 ggtcccacataaaatagaactcgcatattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaataattatttt 19798154  T
217 tatt 220  Q
    ||||    
19798155 tatt 19798158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 39199817 - 39199917
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgt----ttaaattgcagtatttacttttaaatacttaataacgataaaaataata 202  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||    ||||||||||||||||||||||||||||||||||| |||||||||||||    
39199817 agagtgtggaggtcccacataaaatagaacacacacattaatagtgtgtgtttaaattgcagtatttacttttaaatacttaataatgataaaaataata 39199916  T
203 g 203  Q
    |    
39199917 g 39199917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 12261021 - 12260912
Alignment:
109 agagtgtggaggtcccacataaaatagaacacat--attaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||||||||||||||||||   |||| |||||||||||| |  ||||||| |||||||||||| |||| |||||||||||||||||    
12261021 agagtgtgg-ggtcccacataaaatagaacacactcattagtagtgtttaaatagtggtatttaattttaaatacttgataatgataaaaataatagtaa 12260923  T
207 ttattattttt 217  Q
    |||||||||||    
12260922 ttattattttt 12260912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 25844802 - 25844693
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
25844802 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 25844703  T
207 ttattatttt 216  Q
    ||||||||||    
25844702 ttattatttt 25844693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 39586131 - 39586245
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||||||||||||||||||||||||||| | ||||||| ||||||||| |   |||||| |||||||||| | |||| ||||||||||||| |||||    
39586131 agagtgtggaggtcccacataaaatagaacaaacattaata-tgtttaaatagtgatatttaattttaaatacctgataatgataaaaataataataatt 39586229  T
209 attatt-tttattcat 223  Q
    |||||| |||||||||    
39586230 attattctttattcat 39586245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 38622235 - 38622135
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||  |||||||||||||||||||  |||||||| ||||||||||| ||||||||||  |||| ||||||| |||| |||||||||||||||||    
38622235 agagtgtgggagtcccacataaaatagaactcacatattagtagtgtttaaaatgcagtatttgattttgaatacttgataatgataaaaataatagtaa 38622136  T
207 t 207  Q
    |    
38622135 t 38622135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 51040573 - 51040680
Alignment:
111 agtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    |||||||  ||||||||| |||||||||||| |  ||| ||||||||||||||   |||||| |||||||||||| |||| |||||||||||||||||||    
51040573 agtgtgggagtcccacatgaaatagaacacacacattagtagtgtttaaattgtgttatttaattttaaatacttgataatgataaaaataatagtaatt 51040672  T
209 attatttt 216  Q
    ||||||||    
51040673 attatttt 51040680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 10141099 - 10141030
Alignment:
147 atagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    |||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||||||||||||    
10141099 atagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaattattatttt 10141030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 11807265 - 11807151
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||| |||| | ||||||||||||||||||| |  |||  |||||||||||||  |||||||  ||||||||||| |||| |||||||| |||| |||    
11807265 agagtgcggagattccacataaaatagaacacacacattagcagtgtttaaattgtggtatttaaatttaaatacttgataatgataaaaacaatattaa 11807166  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
11807165 ttattatttttattc 11807151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 16036652 - 16036535
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||||||||||||||||||||||  |||| |||| |||||||||||| |  |||||||  ||||||||| | |||| ||| ||||||||| | |    
16036652 agagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaatagtggtatttaaatttaaatacctgataatgatgaaaataataatta 16036553  T
207 ttattatt-tttattcat 223  Q
    |||||||| |||||||||    
16036552 ttattattctttattcat 16036535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 26926780 - 26926879
Alignment:
121 tcccacataaaatagaacacata--ttaatagtgttt-aaattgcagtatttactttt-aaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||||| |  ||| |||||||| ||||||  ||||||| |||| |||||||| |||| |||||||||||||||||||||||||||    
26926780 tcccacataaaatagaacacacacattagtagtgttttaaattgtggtatttaatttttaaatacttgataatgataaaaataatagtaattattatttt 26926879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 47450278 - 47450357
Alignment:
142 tattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    ||||| ||||||||||| |||  |||||| |||||||||||| |||| ||||||||||||| | ||||||||||||||||    
47450278 tattagtagtgtttaaactgcgttatttaattttaaatacttgataatgataaaaataataattattattatttttattc 47450357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 39199714 - 39199760
Alignment:
5 tgatggcgattcttgataatgttggaacattggtgtgatgtgggaag 51  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
39199714 tgatggtgattcttgataatgttggaacattggtgtgatgtgggaag 39199760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 33300379 - 33300425
Alignment:
175 taaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||    
33300379 taaatacttgataatgataaaaataatagtaattattatttttattc 33300425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 23191902 - 23191994
Alignment:
124 cacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatt 214  Q
    |||||||||||||||||| |  ||| |||||||||| | |  ||||||| |||||||||| | |||| ||||||||||||| | |||||||||    
23191902 cacataaaatagaacacacacattagtagtgtttaagtagtggtatttaattttaaatacctgataatgataaaaataataattattattatt 23191994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 46697315 - 46697271
Alignment:
173 tttaaatacttaataacgataaaaataatagtaattattattttt 217  Q
    ||||||||||| | || ||||||||||||||||||||||||||||    
46697315 tttaaatacttgaaaatgataaaaataatagtaattattattttt 46697271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 8138593 - 8138565
Alignment:
193 aaaaataatagtaattattatttttattc 221  Q
    |||||||||||||||||||||||||||||    
8138593 aaaaataatagtaattattatttttattc 8138565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 12257067 - 12256954
Alignment:
109 agagtgtggaggtcccacataaaatagaacacat--attaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||||||||||||||||||||   |||| ||||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
12257067 agagtgtgg-ggtcccacataaaatagaacacacgcattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 12256969  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
12256968 ttattatttttattc 12256954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 42625628 - 42625747
Alignment:
109 agagtgtggaggtcccacataaaatagaac--acatattaatagtgtttaaattgc-----agtatttacttttaaatacttaataacgataaaaataat 201  Q
    ||||||||| ||||||||||||||||||||  ||| |||| |||||||||||||||     |||||||| |||||||||||| |||| ||||||||||||    
42625628 agagtgtgggggtcccacataaaatagaactcacacattagtagtgtttaaattgcggtgcagtatttaattttaaatacttgataatgataaaaataat 42625727  T
202 agtaattattatttttattc 221  Q
    ||||||||||||||||||||    
42625728 agtaattattatttttattc 42625747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 12181802 - 12181912
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||    
12181802 agagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataatagtaa 12181901  T
207 ttattattttt 217  Q
    | || ||||||    
12181902 taatcattttt 12181912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 12800405 - 12800322
Alignment:
138 cacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||    
12800405 cacacattagtagtgtttaaattgcagtatttaattttaaatacttgataatgataaaaataatagtaattattatttttattc 12800322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 16373373 - 16373280
Alignment:
128 taaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    ||||||| |||||| |||| ||||||||||||||||||| ||| |||||||||| | |||||||||||||||||||| ||||||||||||||||    
16373373 taaaatataacacacattagtagtgtttaaattgcagtagttaattttaaatacctgataacgataaaaataatagtcattattatttttattc 16373280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 26342251 - 26342144
Alignment:
111 agtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||| ||||||||||||||||||||||| |  ||| ||||||||||||||   |||||| |||||||||||| |||| |||||||||||||||||||    
26342251 agtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtgatatttaattttaaatacttgataatgataaaaataatagtaatt 26342152  T
209 attatttt 216  Q
    ||||||||    
26342151 attatttt 26342144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 21672239 - 21672137
Alignment:
121 tcccacataaaataga--acacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttta 218  Q
    ||||||||||||||||  ||||| |||| || |||||||||||| ||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||    
21672239 tcccacataaaatagagcacacacattagtactgtttaaattgcggtatttaattttatatacttgataatgataaaaataatagtaattattattttta 21672140  T
219 ttc 221  Q
    |||    
21672139 ttc 21672137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 4931269 - 4931160
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
4931269 agagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 4931170  T
207 ttattatttt 216  Q
    ||||||||||    
4931169 ttattatttt 4931160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 6590079 - 6590177
Alignment:
123 ccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    |||||||||||| |||| |||||| |||||||||||||| | |||||| |||||||||||| |||| | ||||||||||||| ||||||||||||||||    
6590079 ccacataaaatataacatatattagtagtgtttaaattgtattatttaattttaaatacttgataaagctaaaaataatagtcattattatttttattc 6590177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 27246606 - 27246710
Alignment:
117 gaggtcccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||  |||||| |  ||||||||| |||| ||||||| ||||| | |||||||||||    
27246606 gaggtctcacataaaatagaacacacattaatagtgtttaaattgcgctatttattcataaatacttgataatgataaaactaataatcattattatttt 27246705  T
217 tattc 221  Q
    |||||    
27246706 tattc 27246710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 3046610 - 3046506
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttt 216  Q
    ||||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||| | | ||| |||||    
3046610 ggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgataaaaataataattactataatttt 3046511  T
217 tattc 221  Q
    |||||    
3046510 tattc 3046506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 3881017 - 3880901
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata-----ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatag 203  Q
    ||||||||| |||| |||||||||||||||||| |     ||| ||||| ||||||||   |||||| |||||||||||| |||| ||||||||||||||    
3881017 agagtgtgggggtctcacataaaatagaacacacacatcattagtagtgcttaaattgtgatatttaattttaaatacttgataatgataaaaataatag 3880918  T
204 taattattatttttatt 220  Q
    |||||||||||||||||    
3880917 taattattatttttatt 3880901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 9814941 - 9815042
Alignment:
125 acataaaatagaacacata--ttaatagtgtttaaattgcagtatttactttt-aaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    |||||||||||||||||||  ||| |||| |||||||||| ||||||| |||| |||||||| ||||  || ||||||||||||||||||||||||||||    
9814941 acataaaatagaacacatacattagtagtttttaaattgcggtatttaatttttaaatacttgataataatgaaaataatagtaattattatttttattc 9815040  T
222 at 223  Q
    ||    
9815041 at 9815042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 10716866 - 10716967
Alignment:
125 acataaaatagaacacata--ttaatagtgtttaaattgcagtatttactttt-aaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    |||||||||||||||||||  ||| |||| |||||||||| ||||||| |||| |||||||| ||||  || ||||||||||||||||||||||||||||    
10716866 acataaaatagaacacatacattagtagtttttaaattgcggtatttaatttttaaatacttgataataatgaaaataatagtaattattatttttattc 10716965  T
222 at 223  Q
    ||    
10716966 at 10716967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 8269304 - 8269232
Alignment:
149 agtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattatttttattc 221  Q
    |||||||||| |||  |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||    
8269304 agtgtttaaactgcgatatttaattttaaatacttgataatgataaaaataatagtaattattatttttattc 8269232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 13313364 - 13313474
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    |||||||||| |||||||||||||||||||||| |  ||| |||||||||||| |  ||||||| |||||||||||| |||| ||| |||||||||  ||    
13313364 agagtgtggatgtcccacataaaatagaacacacacattagtagtgtttaaatagtggtatttaattttaaatacttgataatgatgaaaataataacaa 13313463  T
207 ttattattttt 217  Q
    ||||| |||||    
13313464 ttatttttttt 13313474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 10392139 - 10392256
Alignment:
109 agagtgtggaggtcccacataaaatagaacacatat--taatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataata-gta 205  Q
    ||||||||  || |||||||||||||||||||| ||  ||  |||||||||||||| ||||||| |||||||||||| ||||  ||||||| || | |||    
10392139 agagtgtgagggccccacataaaatagaacacacatgttatcagtgtttaaattgcggtatttaattttaaatacttgataataataaaaaaaaaatgta 10392238  T
206 attattatttttattcat 223  Q
    ||||||||||||||||||    
10392239 attattatttttattcat 10392256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 26286210 - 26286325
Alignment:
111 agtgtggaggtcccacataaaataga--acacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaatt 208  Q
    ||||||| ||||||||||||||||||  ||||| |||| |||||||||||| |  ||||||| |||||||||  | |||| ||| ||||||||| | |||    
26286210 agtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaatagtggtatttaattttaaataactgataatgatgaaaataataattatt 26286309  T
209 attatt-tttattcat 223  Q
    |||||| |||||||||    
26286310 attattctttattcat 26286325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 23247618 - 23247701
Alignment:
119 ggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataa 200  Q
    |||||||| |||||||||| ||| |  ||| ||||||||||||| | ||||||| |||||||||||| |||| |||||||||||    
23247618 ggtcccacctaaaatagaaaacaaacattagtagtgtttaaattacggtatttaattttaaatacttgataatgataaaaataa 23247701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 23152177 - 23152230
Alignment:
166 atttacttttaaatacttaataacgataaaaataatagtaattattatttttat 219  Q
    ||||| ||||||| |||| |||| ||||||||||||| | ||||||||||||||    
23152177 atttaattttaaaaacttgataatgataaaaataataattattattatttttat 23152230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 6278 - 6164
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||| |||||||||||||| ||||||  |||| |||| | ||||||||||||  ||||||| |||||||||||| |||| |||||||||||||||||    
6278 agagtgttgaggtcccacataagatagaatacacacattagtggtgtttaaattgtggtatttaattttaaatacttgataatgataaaaataatagtaa 6179  T
207 ttattatttttattc 221  Q
    |||||||||||||||    
6178 ttattatttttattc 6164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 5002 - 4903
Alignment:
123 ccacataaaatagaacacatattaatagtgtttaaattgcagtatttacttttaaatacttaataacgat-aaaaataatagtaattattatttttattc 221  Q
    |||||||||||| ||||||||||| | |||||||| |||| ||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||    
5002 ccacataaaatataacacatattagttgtgtttaagttgcggtatttaattttaaatacttgataatgataaaaaataatagtaattattatttttattc 4903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 30211 - 30109
Alignment:
121 tcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaattattattttta 218  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||| ||||||| |||||| ||| | |||| |||||||||||||||||||||||||||||    
30211 tcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaactacatgataatgataaaaataatagtaattattattttta 30112  T
219 ttc 221  Q
    |||    
30111 ttc 30109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 26487 - 26413
Alignment:
109 agagtgtggaggtcccacataaaatagaa--cacatattaatagtgtttaaattgcagtatttacttttaaatac 181  Q
    |||||| ||||||||||||||||||||||  |||| |||| |||||||||||| |  ||||||| ||||||||||    
26487 agagtgcggaggtcccacataaaatagaacacacacattagtagtgtttaaatagaggtatttaattttaaatac 26413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 5110 - 5001
Alignment:
109 agagtgtggaggtcccacataaaatagaacac--atattaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| |||||| |||||||||||||||  | |||| ||||||||||||||  ||||||| |||||||||||| |||  |||||||||||||||||    
5110 agagtgtgggggtcccgcataaaatagaacactcacattagtagtgtttaaattgtggtatttaattttaaatacttgatagtgataaaaataatagtaa 5011  T
207 ttattatttt 216  Q
    ||||||||||    
5010 ttattatttt 5001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 442990 - 443102
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| ||||||||||||||||||||||| |  ||| | | ||||||||||  ||||||| ||||||||| || |||| |||||||||||||||||    
442990 agagtgtgg-ggtcccacataaaatagaacacacacattagttgggtttaaattgtggtatttaattttaaatatttgataatgataaaaataatagtaa 443088  T
207 ttattatttttatt 220  Q
    ||||||||||||||    
443089 ttattatttttatt 443102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 8155 - 8045
Alignment:
109 agagtgtggaggtcccacataaaatagaacacata--ttaatagtgtttaaattgcagtatttacttttaaatacttaataacgat-aaaaataatagta 205  Q
    ||||||||| |||||||||||| |||||||||| |  ||| ||||||||||||||  ||||||| |||||||||||| |||| ||| |||||||||||||    
8155 agagtgtgggggtcccacataagatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgataatgataaaaaataatagta 8056  T
206 attattatttt 216  Q
    |||||||||||    
8055 attattatttt 8045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 36167 - 36055
Alignment:
109 agagtgtggaggtcccacataaaatagaacacat--attaatagtgtttaaattgcagtatttacttttaaatacttaataacgataaaaataatagtaa 206  Q
    ||||||||| || ||||||||||||||||| ||   |||| ||||||||||| ||| ||||||| ||||||||| || |||| |||||||||||||||||    
36167 agagtgtgg-ggccccacataaaatagaactcacgcattagtagtgtttaaactgcggtatttaattttaaatatttgataatgataaaaataatagtaa 36069  T
207 ttattatttttatt 220  Q
    ||||||||||||||    
36068 ttattatttttatt 36055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University