View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6784_high_5 (Length: 357)
Name: NF6784_high_5
Description: NF6784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6784_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 204 - 348
Target Start/End: Complemental strand, 13827521 - 13827377
Alignment:
| Q |
204 |
ataactacattcgaacctttgaatcggcctcggtgaccaaataaccatcataaggacacgccctggtggtaccgacgacatacgtcaaacatggtttgca |
303 |
Q |
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| T |
13827521 |
ataactacattcgaacctttgaatcggcctcggtgaccaaataaccatcataaggacacgccctggtggtaccgacgacatacgtcaaacatggtttgca |
13827422 |
T |
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| Q |
304 |
atataaatgagtgcattgtgactgtaaagcttcattcggaaacac |
348 |
Q |
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| T |
13827421 |
atataaatgagtgcattgtgactgcaaagcttcattcggaaacac |
13827377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 13827725 - 13827604
Alignment:
| Q |
1 |
caatgagatggaca-tcagacaaagttccttgccatgaacatccactcctatgatacaaacaatgaactgctattttcccaatcgtttccgccaatgtct |
99 |
Q |
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| T |
13827725 |
caatgagatgtacaatcagacaaagttccttgccatgaacatccactcctatgatacaaacaatgaacagctattttcccaatcgtttccgccaatgtct |
13827626 |
T |
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| Q |
100 |
tattcgactcaatcaacggctg |
121 |
Q |
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| T |
13827625 |
tattcgactcaatcaacggctg |
13827604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 15497842 - 15497745
Alignment:
| Q |
19 |
acaaagttccttgccatgaacatccactcctatgatacaaacaatgaactgctattttcccaatcgtttccgccaatgtcttattcgactcaatcaac |
116 |
Q |
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| T |
15497842 |
acaaagttccttgccacgagcatccactcctacgacacaaacaacgaacctctattttccaaatagtttccgccaatgacttattcgactcaatcaac |
15497745 |
T |
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