View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6784_high_6 (Length: 328)
Name: NF6784_high_6
Description: NF6784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6784_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 38125198 - 38125007
Alignment:
| Q |
15 |
tttggtgttgaagttttgtttaatcgagcattacgaatatatgcttggagaatagaagaaaaagaaacattggtttgagaaaagagtatgttggagactt |
114 |
Q |
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| T |
38125198 |
tttggtgttgaagttttgtttaatcgagcattacgaatatatgcttggagaatagaagaaaaagaaacattggtttgagaaaagagtatgttggagactt |
38125099 |
T |
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| Q |
115 |
ggtctgaagggtttgtgtggtttgttaaacactcaagaaatgaggtgtacactgattcttctgttggggatgcttcagaaacagtgacattg |
206 |
Q |
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| T |
38125098 |
ggtctgaagggtttgtgtggtttgttaaacactcaagaaatgaggtgtacactgattcttctgttggggatgcttcagaaacagtgacattg |
38125007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 38124967 - 38124906
Alignment:
| Q |
246 |
tgaaccaaagtactagattttcccatagtgtaaaagtgtaactgtgtcagtataaccacggt |
307 |
Q |
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| T |
38124967 |
tgaaccaaagtactagattttcccatagtgtaaaagtgtaactgtgtcagtataaccacggt |
38124906 |
T |
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