View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6784_low_1 (Length: 476)

Name: NF6784_low_1
Description: NF6784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6784_low_1
NF6784_low_1
[»] chr7 (2 HSPs)
chr7 (2-474)||(27153031-27153503)
chr7 (58-162)||(19193576-19193681)
[»] chr4 (4 HSPs)
chr4 (44-389)||(14291562-14291908)
chr4 (175-389)||(14307743-14307957)
chr4 (232-320)||(3881735-3881823)
chr4 (44-84)||(24133522-24133562)
[»] chr6 (2 HSPs)
chr6 (216-383)||(27852934-27853101)
chr6 (216-414)||(12645929-12646127)
[»] chr5 (2 HSPs)
chr5 (259-370)||(32874452-32874563)
chr5 (352-385)||(5864733-5864766)
[»] chr2 (3 HSPs)
chr2 (258-325)||(16322492-16322559)
chr2 (266-365)||(42403214-42403313)
chr2 (259-311)||(14653728-14653780)
[»] chr1 (3 HSPs)
chr1 (286-368)||(1525041-1525123)
chr1 (259-311)||(50236616-50236668)
chr1 (232-320)||(50451915-50452003)
[»] chr8 (4 HSPs)
chr8 (232-275)||(13030221-13030264)
chr8 (222-385)||(26708683-26708846)
chr8 (259-320)||(23132624-23132685)
chr8 (220-377)||(38348475-38348632)
[»] chr3 (2 HSPs)
chr3 (197-292)||(11889809-11889904)
chr3 (259-320)||(11897195-11897256)
[»] scaffold0214 (1 HSPs)
scaffold0214 (259-311)||(9011-9063)


Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 2 - 474
Target Start/End: Original strand, 27153031 - 27153503
Alignment:
Q  2 aatgagttggtaccaaaaatgatgttaatcaagggtttggttggtagaggcacttctgataatgtcgttgtttttcaggaaatcatccactacatgcgta 101  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27153031 aatgaattggtaccaaaaatgatgttaatcaagggtttggttggtagaggcacttctgatagtgtcgttgtttttcaggaaatcatccactacatgcgta 27153130  T
Q  102 gatataaaagaaaaagggtctggttgctttcaaacatgatttagagaaagatttttacaacgtcaactagattttccttcaatcttgcttccaaaacttt 201  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27153131 gatataaaagaaaaagggtatggttgctttcaaacatgatttagagaaagatttttacaacgtcaactagattttccttcaatcttgcttccaagacttt 27153230  T
Q  202 ggctttctagatactacaatcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagcctt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27153231 ggctttctagatactacaatcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagattcctcctttcaagcctt 27153330  T
Q  302 ctcatggccttcggcaaggagaccatctcgctccctatttatttatcctttatatggaaaagctctccattgccatcaacaatgatgttaatcaaggtac 401  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27153331 atcatggccttcggcaaggagaccatctctctccctatttatttatcctttgtatggaaaagctctccattgccatcaacaatgatgttaatcaaggtac 27153430  T
Q  402 ctgggacaccatctgtctctctacaaacgaccccaaaatttctcaccttctctttgcagatgatgtccatctc 474  Q
     ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  27153431 ttgggacatcatctgtctctctacaaacgacccctaaatttctcaccttctctttgcaaatgatgtccttctc 27153503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 19193681 - 19193576
Alignment:
Q  58 tgataatgtcgttgtttttcaggaaatcatccactacatgcgtagatata-aaagaaaaagggtctggttgctttcaaacatgatttagagaaagatttt 156  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||| ||  |||||||||||| ||||||||||||||| ||||||  |||||| ||||    
T  19193681 tgataatgtcgttattttgcaggaaatcatccactacatgtgtagatctatgaagaaaaagggtatggttgctttcaaacttgatttcaagaaagctttt 19193582  T
Q  157 tacaac 162  Q
     |||||    
T  19193581 gacaac 19193576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 389
Target Start/End: Original strand, 14291562 - 14291908
Alignment:
Q  44 ggtagaggcacttctgataatgtcgttgtttttcaggaaatcatccactacatgcgtagatataa-aagaaaaagggtctggttgctttcaaacatgatt 142  Q
    |||||||| |||||||||||||  |||||||| ||||||||||| ||| | ||| | ||||  || ||||||||||| | ||| || || || | ||| |    
T  14291562 ggtagaggtacttctgataatgctgttgttttgcaggaaatcattcaccatatgaggagatcaaagaagaaaaaggggcaggtggcatttaagcttgact 14291661  T
Q  143 tagagaaagatttttacaacgtcaactagattttccttcaatcttgcttccaaaactttggctttctagatactacaatcaagctaattatgcattgtgt 242  Q
    | |||||||  ||| | || || | || ||  ||||||||||| ||| | ||| | |||||||||| ||||| |||||| ||||| || |||||||||||    
T  14291662 ttgagaaagcctttgataatgtaagctggaccttccttcaatcatgccttcaagattttggctttccagatattacaattaagcttatcatgcattgtgt 14291761  T
Q  243 cacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaaggagaccatctcgctccctattta 342  Q
    |||||| || ||||| ||||| || ||||||||||| ||||||| |||||| |||||||| ||||||||  | |||||||| | || | | || ||  |     
T  14291762 cacctcttccactctctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttacctt 14291861  T
Q  343 tttatcctttatatggaaaagctctccattgccatcaacaatgatgt 389  Q
    || ||| | | ||||||||| || |||||| ||||||||||||||||    
T  14291862 ttcatcatctgtatggaaaaactttccatttccatcaacaatgatgt 14291908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 14307743 - 14307957
Alignment:
Q  175 ttccttcaatcttgcttccaaaactttggctttctagatactacaatcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatg 274  Q
    ||||||||||| ||| | ||| | |||||||||| ||||| |||||| ||||| || ||||||||||||||||| || ||||| ||||| || |||||||    
T  14307743 ttccttcaatcatgccttcaagattttggctttccagatattacaattaagcttatcatgcattgtgtcacctcttccactctctctattctttggaatg 14307842  T
Q  275 ggaataagatgcctcctttcaagccttctcatggccttcggcaaggagaccatctcgctccctatttatttatcctttatatggaaaagctctccattgc 374  Q
    |||| ||||||| |||||| |||||||| ||||||||  | |||||||| | || | | || ||  | || ||| ||| ||||||||| || |||||| |    
T  14307843 ggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatggaaaaactttccatttc 14307942  T
Q  375 catcaacaatgatgt 389  Q
    |||||||||||||||    
T  14307943 catcaacaatgatgt 14307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 3881735 - 3881823
Alignment:
Q  232 atgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaagg 320  Q
    |||||||||||||||||||| ||  | |||||| |||||||||| || || ||||| | |||||| ||| | |||||||| || |||||    
T  3881735 atgcattgtgtcacctcctccaccttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaagg 3881823  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 24133562 - 24133522
Alignment:
Q  44 ggtagaggcacttctgataatgtcgttgtttttcaggaaat 84  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  24133562 ggtagaggtacttctgataatgttgttgttttgcaggaaat 24133522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 216 - 383
Target Start/End: Complemental strand, 27853101 - 27852934
Alignment:
Q  216 tacaatcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcgg 315  Q
    ||||| |||| | |||||||||||||| |||||||| | ||| ||||| || ||||| || || || |||||| ||||||||||||||||||| ||  |     
T  27853101 tacaaccaagttcattatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaaga 27853002  T
Q  316 caaggagaccatctcgctccctatttatttatcctttatatggaaaagctctccattgccatcaacaa 383  Q
    ||||| |||| | |  |||| || ||||| ||||||| ||||||||||||||||||||||||||||||    
T  27853001 caaggggaccctttatctccttacttattcatcctttgtatggaaaagctctccattgccatcaacaa 27852934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 414
Target Start/End: Complemental strand, 12646127 - 12645929
Alignment:
Q  216 tacaatcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcgg 315  Q
    |||||| ||||| || |||||||||||||| || || |||||||||||||| ||||||||||| |  ||||||| ||||||||| |||||||| ||  ||    
T  12646127 tacaattaagcttatcatgcattgtgtcacttcatccactctttctatcctttggaatgggaacattatgcctcttttcaagccatctcatggtctcagg 12646028  T
Q  316 caaggagaccatctcgctccctatttatttatcctttatatggaaaagctctccattgccatcaacaatgatgttaatcaaggtacctgggacaccatc 414  Q
     |||| || |  ||| | || ||||| ||||| |||| ||||||||||||||| ||| | ||||||||||  ||| | |||||  |||||||| |||||    
T  12646027 taaggggatcccctctccccttatttgtttattctttgtatggaaaagctctctatttctatcaacaatgcagttcagcaaggagcctgggaccccatc 12645929  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 370
Target Start/End: Complemental strand, 32874563 - 32874452
Alignment:
Q  259 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaaggagaccatctcgctccctatttatttatcctttatatgg 358  Q
    |||||||| || |||||||| ||| |||||||||||||||||||||||||||| || ||||||||||  ||| ||||||||||||| ||| |||  ||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  359 aaaagctctcca 370  Q
    ||||||||||||    
T  32874463 aaaagctctcca 32874452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 5864766 - 5864733
Alignment:
Q  352 tatatggaaaagctctccattgccatcaacaatg 385  Q
    |||||||||||||||||| |||||||||||||||    
T  5864766 tatatggaaaagctctcccttgccatcaacaatg 5864733  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 16322492 - 16322559
Alignment:
Q  258 ttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaaggagacc 325  Q
    |||| ||||||||||||| || ||||||||||||||||||||  ||||||||||||| ||||| ||||    
T  16322492 ttctctcctatggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacc 16322559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 42403313 - 42403214
Alignment:
Q  266 tatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaaggagaccatctcgctccctatttatttatcctttatatggaaaagct 365  Q
    ||||||| || ||||| |||||||||||||||||  |||||||||| |||||||| |||| |||| | || ||| ||||||| || |  |||||||||||    
T  42403313 tatggaacggaaataaaatgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagct 42403214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 14653780 - 14653728
Alignment:
Q  259 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 311  Q
    ||||| || ||||||||||| ||| |||| |||||||||||||||||||||||    
T  14653780 tctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 368
Target Start/End: Original strand, 1525041 - 1525123
Alignment:
Q  286 cctcctttcaagccttctcatggccttcggcaaggagaccatctcgctccctatttatttatcctttatatggaaaagctctc 368  Q
    ||||||||||||||||| || || ||||||||||| ||||  ||  ||||||| |||||||| || | |||||||||||||||    
T  1525041 cctcctttcaagccttcccacggtcttcggcaaggtgacccgctatctccctacttatttattctctgtatggaaaagctctc 1525123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 50236668 - 50236616
Alignment:
Q  259 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 311  Q
    |||||| ||||||| ||||| |||||||| |||||||||||| ||||||||||    
T  50236668 tctatcttatggaacgggaacaagatgccccctttcaagcctactcatggcct 50236616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 50451915 - 50452003
Alignment:
Q  232 atgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaagg 320  Q
    |||||||||||||||||||| ||| | |||||| |||||||||| || || ||||| | |||||| ||| | |||||||| || |||||    
T  50451915 atgcattgtgtcacctcctccactttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaagg 50452003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 13030221 - 13030264
Alignment:
Q  232 atgcattgtgtcacctcctcgactctttctatcctatggaatgg 275  Q
    ||||||||||||||||| || |||||||||||||| ||||||||    
T  13030221 atgcattgtgtcacctcttcaactctttctatcctttggaatgg 13030264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 385
Target Start/End: Complemental strand, 26708846 - 26708683
Alignment:
Q  222 caagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaagga 321  Q
    |||||| ||||||||||||||||| || || ||| | || || ||||||||||| || ||| | ||||  || ||||| |||||||| ||||| || ||     
T  26708846 caagctcattatgcattgtgtcacttcatctactttctcaattctatggaatggaaacaagcttcctcaatttaagccatctcatggtcttcgccagggt 26708747  T
Q  322 gaccatctcgctccctatttatttatcctttatatggaaaagctctccattgccatcaacaatg 385  Q
    |||| |||| |||| ||  | || || || | ||||||||||||||| || ||||| |||||||    
T  26708746 gaccctctctctccttaccttttcatactgtgtatggaaaagctctctatcgccattaacaatg 26708683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 23132685 - 23132624
Alignment:
Q  259 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaagg 320  Q
    ||||| || ||||| ||||| ||| |||| ||||||||||||||||||||||| || |||||    
T  23132685 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaagg 23132624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 377
Target Start/End: Original strand, 38348475 - 38348632
Alignment:
Q  220 atcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaag 319  Q
    |||||||| || ||||||||||| |||||  | ||  | |||||||| |||||||| || |   || |||||||||||||||| || |  ||||| ||||    
T  38348475 atcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttcccacgatcttcgtcaag 38348574  T
Q  320 gagaccatctcgctccctatttatttatcctttatatggaaaagctctccattgccat 377  Q
    | ||||  ||  |||  ||||||||||| |||| |||||||||||||||  |||||||    
T  38348575 gtgacctgctatctctatatttatttattctttgtatggaaaagctctcggttgccat 38348632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 11889904 - 11889809
Alignment:
Q  197 actttggctttctagatactacaatcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagatgcctcctt 292  Q
    ||||||| || | ||||| ||| || ||||| || ||||| ||||||||||| || ||| | || ||||||||||||||||| || ||||||||||    
T  11889904 actttggtttcccagatattaccataaagctcatcatgcactgtgtcacctcatccactttctccatcctatggaatgggaacaaaatgcctcctt 11889809  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 11897195 - 11897256
Alignment:
Q  259 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggccttcggcaagg 320  Q
    ||||| || ||||| ||||| ||| |||| ||||||||||||||||||||||| || |||||    
T  11897195 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaagg 11897256  T

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Target: scaffold0214 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 9011 - 9063
Alignment:
Q  259 tctatcctatggaatgggaataagatgcctcctttcaagccttctcatggcct 311  Q
    ||||| || |||||||| |||| | ||||||||||| ||||||||||||||||    
T  9011 tctattctttggaatggtaataggctgcctcctttcgagccttctcatggcct 9063  T

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