View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6784_low_7 (Length: 343)

Name: NF6784_low_7
Description: NF6784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6784_low_7
NF6784_low_7
[»] chr4 (1 HSPs)
chr4 (8-200)||(8477894-8478082)
[»] chr5 (1 HSPs)
chr5 (8-67)||(19049565-19049623)
[»] chr2 (3 HSPs)
chr2 (8-79)||(31064704-31064774)
chr2 (8-79)||(23083357-23083427)
chr2 (11-79)||(19402619-19402687)
[»] chr7 (3 HSPs)
chr7 (8-79)||(12526105-12526174)
chr7 (8-79)||(21500854-21500924)
chr7 (8-79)||(21498708-21498778)
[»] chr3 (2 HSPs)
chr3 (16-79)||(8897109-8897172)
chr3 (18-76)||(15669549-15669607)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 8477894 - 8478082
Alignment:
Q  8 atggacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccattataaaaacagtataaatattttcgcatgcaa 107  Q
    |||||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  8477894 atggacttcaagtatagactc-ataatgcacaacaccataaaactcatcattatataattcataccattataaaa---gtataaatatttttgcatgcaa 8477989  T
Q  108 ttttgttaagttttgaaaaatgaatttgaaattcaatatgttttctgtgctattcaaatttttgggatcgattcgcatgcaattttgattttg 200  Q
     ||||||| |||||||||||||||| |||||| ||||||| |||| ||| ||||||| |||||||||| |||| |||||||||||||||||||    
T  8477990 atttgttacgttttgaaaaatgaatctgaaatccaatatggtttccgtggtattcaattttttgggattgatttgcatgcaattttgattttg 8478082  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 19049565 - 19049623
Alignment:
Q  8 atggacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataatt 67  Q
    |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19049565 atggacttctagtatagactcgacaatgcacaacacaa-aaaactcatcattatataatt 19049623  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 31064704 - 31064774
Alignment:
Q  8 atggacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccattata 79  Q
    |||||| ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||| |||||||||    
T  31064704 atggacttcaagtatagacttgacaatgcacatcacca-aaaactcatcattatataattcacaccattata 31064774  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 23083357 - 23083427
Alignment:
Q  8 atggacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccattata 79  Q
    |||||| ||||||||| |||||||||||||||| || || ||| || ||||||| ||||||| |||||||||    
T  23083357 atggacttcaagtatatactcgacaatgcacaataccat-aaattcttcattatgtaattcacaccattata 23083427  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 19402687 - 19402619
Alignment:
Q  11 gacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataa-ttcataccattata 79  Q
    |||||||||||||||||||| |||||||| ||| | ||| || |||||||||||| |||| |||||||||    
T  19402687 gacatcaagtatagactcgaaaatgcacatcacca-aaagctaatcattatataatttcacaccattata 19402619  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 12526105 - 12526174
Alignment:
Q  8 atggacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccattata 79  Q
    |||||| | |||||||||||||| |||||||| |||||  |||||||||||||||||||||| |||||||||    
T  12526105 atggacttaaagtatagactcgataatgcacatcacaa--aaactcatcattatataattcacaccattata 12526174  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 21500924 - 21500854
Alignment:
Q  8 atggacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccattata 79  Q
    |||||| |||||||| ||||||||||||| || ||| | ||||||||||||||||||||| |||||||||||    
T  21500924 atggacttcaagtatggactcgacaatgcgcatcacca-aaaactcatcattatataatttataccattata 21500854  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 21498708 - 21498778
Alignment:
Q  8 atggacatcaagtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccattata 79  Q
    |||||| |||||||| ||||| ||| |||||| ||| | ||| ||||||||||||||||||||| |||||||    
T  21498708 atggacttcaagtatggactcaacattgcacatcactagaaa-ctcatcattatataattcatatcattata 21498778  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 8897172 - 8897109
Alignment:
Q  16 caagtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccattata 79  Q
    |||||||||||||||||||||| | ||| |||||||||| || ||||||||||| |||||||||    
T  8897172 caagtatagactcgacaatgcatatcaccataaaactcaccagtatataattcacaccattata 8897109  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 15669607 - 15669549
Alignment:
Q  18 agtatagactcgacaatgcacaacacaataaaactcatcattatataattcataccatt 76  Q
    |||||||||||||||||||||||||  ||| | ||||||||||||||||||| ||||||    
T  15669607 agtatagactcgacaatgcacaacatcatatagctcatcattatataattcacaccatt 15669549  T

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