View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6786_high_3 (Length: 474)
Name: NF6786_high_3
Description: NF6786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6786_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 40871022 - 40870577
Alignment:
| Q |
19 |
tatgtgtcagttggggatttggctgcggcgaaagaattgtttgaagcaatgcctaataaagatgtggtgtcgtggaattgtatgattgatgggtgtgtaa |
118 |
Q |
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| T |
40871022 |
tatgtgtcagttggggatttggctgcggcgaaagaattgtttgaagcaatgcctaataaagatgtggtgtcgtggaattgtatgattgatgggtgtgtaa |
40870923 |
T |
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| Q |
119 |
gagttgggaatgtttctcttgctcttgagttttttaatcagatggatggggttgttgttaggaatgtggtttcgtggaattcgttgttggctttacatgt |
218 |
Q |
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| T |
40870922 |
gagttgggaatgtttctcttgctcttgagttttttaatcagatggatggggttgttgttaggaatgtggtttcgtggaattcgttgttggctttacatgt |
40870823 |
T |
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| Q |
219 |
aaggatgaagaattatggtgagtgtttgaggatgtttgagaggatgatggaaagtggtgaagctatgccgaatgaggctactttggtgagtgtacttact |
318 |
Q |
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| T |
40870822 |
aaggatgaagaattatggtgagtgtttgaggatgtttgagaggatgatggaaagtggtgaagctatgccaaatgaggctactttggtgagtgtacttact |
40870723 |
T |
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| Q |
319 |
gcttgtgcaaatttagggaagctgaatttgggtttgtgggttcattcttatattaagagtaatgagattaaacttgatgttttgcttgaaacttgtctgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870722 |
gcttgtgcaaatttagggaagctgaatttgggtttgtgggttcattcttatattaagagtaatgagattaaacttgatgttttgcttgaaacttgtctgc |
40870623 |
T |
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| Q |
419 |
taacgatgtatgcaaaatgtggggctatggatttggcaagtgatgt |
464 |
Q |
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| T |
40870622 |
taacgatgtatgcaaaatgtggggctatggatttggcaagtgatgt |
40870577 |
T |
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