View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6786_high_6 (Length: 351)

Name: NF6786_high_6
Description: NF6786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6786_high_6
NF6786_high_6
[»] chr3 (1 HSPs)
chr3 (15-335)||(28969679-28969998)
[»] chr8 (2 HSPs)
chr8 (17-215)||(12737187-12737386)
chr8 (71-125)||(10866038-10866092)
[»] chr5 (2 HSPs)
chr5 (17-127)||(20424895-20425005)
chr5 (71-125)||(12402286-12402340)
[»] chr1 (3 HSPs)
chr1 (71-125)||(31288743-31288797)
chr1 (43-125)||(43805295-43805377)
chr1 (71-191)||(20424961-20425082)
[»] scaffold0604 (1 HSPs)
scaffold0604 (17-205)||(4241-4429)
[»] chr6 (1 HSPs)
chr6 (18-108)||(1882974-1883064)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 28969679 - 28969998
Alignment:
Q  15 gacatcattgcctttccaatacgatcgtaaaatctccaaatcatgactaacgttgtgatttaagacatctctagtaacaacgacattggaagaactcaaa 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28969679 gacatcattccctttccaatacgatcgtaaaatctccaaatcatgacttacgttgtgatttaagacatctttagtaacaacgacattggaagaactcaaa 28969778  T
Q  115 ccataccaagatgtgaaacttgaatatagtccaagtctatcatgacgtcactccaatgacgaacgatacacatatcaagaacttagttgctctattgatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28969779 ccataccaagatgtgaaacttgaatatagtccaagtctatcatgacgtcactccaatgacgaacgatacacatatcaagaacttagttgctctattgatc 28969878  T
Q  215 ttcannnnnnnnngtcaccacttcaacctgtattgattgtaccttaactgccccaatagaagtgctataatataaagtaaacaaccatataatttgaaag 314  Q
    ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28969879 ttcatttttttttgtcaccacttcaacctgtattgattgtaccttaactgccccaatagaagtgctataatataaagtaaacaacca-ataatttgaaag 28969977  T
Q  315 gaaagaattaatccaattgtt 335  Q
    |||||||||||||||| ||||    
T  28969978 gaaagaattaatccaagtgtt 28969998  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 12737386 - 12737187
Alignment:
Q  17 catcattgcctttccaatacgatcgtaaaatctccaaatcatgactaacgttgtgatttaagacatctctagtaacaacgacattggaagaactcaaacc 116  Q
    |||||||||||||| |||| |  |  ||||||||||| ||||||  | ||||  ||||||| |||||| ||| ||| | ||||||||||||||  |||||    
T  12737386 catcattgcctttcaaatatggccacaaaatctccaagtcatgaacaccgttaagatttaaaacatctttagaaaccatgacattggaagaacataaacc 12737287  T
Q  117 ataccaagat-gtgaaacttgaatatagtccaagtctatcatgacgtcactccaatgacgaacgatacacatatcaagaacttagttgctctattgatct 215  Q
    |||||||||| | | | |||||||||| || |||||  |||  |||||||||||| ||| |||||| | ||||||| ||| || |||||| | |||||||    
T  12737286 ataccaagatgggggatcttgaatataatctaagtccgtcacaacgtcactccaaggaccaacgatgcgcatatcaggaagttcgttgctttgttgatct 12737187  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 10866092 - 10866038
Alignment:
Q  71 gatttaagacatctctagtaacaacgacattggaagaactcaaaccataccaaga 125  Q
    ||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||    
T  10866092 gatttaaaacatctttagtaaccatgacattggaagaactcaaaccataccaaga 10866038  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 20425005 - 20424895
Alignment:
Q  17 catcattgcctttccaatacgatcgtaaaatctccaaatcatgactaacgttgtgatttaagacatctctagtaacaacgacattggaagaactcaaacc 116  Q
    |||||||||||||| |||| | ||| ||||||||||||||||||  || |||  ||||||| || ||| ||| ||| | ||||||||||||||  |||||    
T  20425005 catcattgcctttcaaatatggtcgcaaaatctccaaatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattggaagaacctaaacc 20424906  T
Q  117 ataccaagatg 127  Q
    |||||||||||    
T  20424905 ataccaagatg 20424895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 12402286 - 12402340
Alignment:
Q  71 gatttaagacatctctagtaacaacgacattggaagaactcaaaccataccaaga 125  Q
    ||||||| |||||| ||| ||| | ||||||||||||||||||||||||||||||    
T  12402286 gatttaaaacatctttagaaaccatgacattggaagaactcaaaccataccaaga 12402340  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 31288743 - 31288797
Alignment:
Q  71 gatttaagacatctctagtaacaacgacattggaagaactcaaaccataccaaga 125  Q
    ||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||    
T  31288743 gatttaaaacatctttagtaaccatgacattggaagaactcaaaccataccaaga 31288797  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 43805295 - 43805377
Alignment:
Q  43 aaaatctccaaatcatgactaacgttgtgatttaagacatctctagtaacaacgacattggaagaactcaaaccataccaaga 125  Q
    ||||||||||| ||||||   | |||| | ||||| ||||||   ||||||| ||||||||||||||||||||||||||||||    
T  43805295 aaaatctccaagtcatgagcgatgttggggtttaaaacatcttgggtaacaatgacattggaagaactcaaaccataccaaga 43805377  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 20425082 - 20424961
Alignment:
Q  71 gatttaagacatctctagtaacaacgacattggaagaactcaaaccataccaagat-gtgaaacttgaatatagtccaagtctatcatgacgtcactcca 169  Q
    ||||||| || ||| ||| |||| |||||||||||||    |||||| ||||| || ||| | |||||||||||||||||||| | | ||| ||||||||    
T  20425082 gatttaaaacctctttagaaacatcgacattggaagattctaaaccacaccaatatagtggatcttgaatatagtccaagtctgttacgacatcactcca 20424983  T
Q  170 atgacgaacgatacacatatca 191  Q
    | ||| |||||| | |||||||    
T  20424982 aggaccaacgatgcgcatatca 20424961  T

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Target: scaffold0604 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 4429 - 4241
Alignment:
Q  17 catcattgcctttccaatacgatcgtaaaatctccaaatcatgactaacgttgtgatttaagacatctctagtaacaacgacattggaagaactcaaacc 116  Q
    |||||||||||||| |||| |  || ||||||||||| ||||||  || |||  ||||||| || ||| ||| ||| | ||||||||||||||  |||||    
T  4429 catcattgcctttc-aatatggccgcaaaatctccaagtcatgatcaatgttaggatttaaaacctctttagaaaccatgacattggaagaacctaaacc 4331  T
Q  117 ataccaagat-gtgaaacttgaatatagtccaagtctatcatgacgtcactccaatgacgaacgatacacatatcaagaacttagttgct 205  Q
    |||||||||| | ||| ||||| |||| || |||| |||||  ||||||||||||  || |||||| | ||||||| ||| || ||||||    
T  4330 ataccaagatggggaatcttgattataatctaagtttatcacaacgtcactccaagtaccaacgatgcgcatatcaggaaattcgttgct 4241  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 1883064 - 1882974
Alignment:
Q  18 atcattgcctttccaatacgatcgtaaaatctccaaatcatgactaacgttgtgatttaagacatctctagtaacaacgacattggaagaa 108  Q
    ||||||||| ||||||||||||   |||||||  || |||||| | || ||  |||||||||||| | ||||||||| |||||||||||||    
T  1883064 atcattgcccttccaatacgattaaaaaatctaaaagtcatgagtgacattaggatttaagacatatttagtaacaatgacattggaagaa 1882974  T

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