View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6786_low_1 (Length: 1020)
Name: NF6786_low_1
Description: NF6786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6786_low_1 |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 9919 - 9411
Alignment:
| Q |
18 |
cagtaatgaaagtagcagataaattttctaaaaacatgcatgaatttcacgaggaatcgaaaatgcacaatccttattcgatattcaataatccaaattt |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || ||||| |
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| T |
9919 |
cagtaatgaaagttgcagataaattttctaaaaacatgcatgaatttcacgaggaatcgaaaatggacaatccttattcaatattcaataaccccaattt |
9820 |
T |
|
| Q |
118 |
ctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggccaagaatgatagaattacaatgtacctg |
217 |
Q |
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|| |||||||| |||||||||||| ||| ||||| ||| | |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9819 |
ctaaaccctaaaacaattatcacagcattcctatcccaaatccataactcagtgaatttt-caaattggggccaagaatgatagaattacaatgtacctg |
9721 |
T |
|
| Q |
218 |
ctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaacatcaccatcatgttcctcaagagca |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9720 |
ctgagccgcaacgctacgagtaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaacatcaccatcatgttccttaagagca |
9621 |
T |
|
| Q |
318 |
acaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagcacacaaccaaaatctccgcgaaaaagca |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9620 |
acaccaagcatatttttggcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagcacacaaccaaaatctccgcggaaaagca |
9521 |
T |
|
| Q |
418 |
acataatcgaacctattccaaacactcacaacaaataacaaattaaacgacataactcaaatcacagctgtaaaatagtcatcattaatactactttagt |
517 |
Q |
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| T |
9520 |
acataatcgaacctattccaaacactcacaacaaataacaaattaaacgacataactcaaatcacattagtaaaatagtcatcagtagtactcctttaat |
9421 |
T |
|
| Q |
518 |
taataataat |
527 |
Q |
| |
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|||||||||| |
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| T |
9420 |
taataataat |
9411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 625 - 1001
Target Start/End: Complemental strand, 9299 - 8925
Alignment:
| Q |
625 |
gggttagggttacgtaccgggacagtgacaggcgtcgatggcggtgacaatgacggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtga |
724 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9299 |
gggttagggatacgtaccgggacagtgacaggcgtcgatagcggtgacaacaacggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtga |
9200 |
T |
|
| Q |
725 |
gaagtgccagtatgaagaatgcgaagaagggagagattgaaattgggaaatttgatgggaagtagtcttgcggtgattggagagcagaagagtgggccat |
824 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9199 |
gaagtgccagtatgaagaatgcgaagaagggagagattgaaattgggaaatttgatgggaagtagtctggcggtgattggagagcagaagagtgggccat |
9100 |
T |
|
| Q |
825 |
gtgaccatttagaagagagacctttagtgtgatcggaatgaagatgtgttaagaagtatgcttcactaccctttccccaacgatctactgatattaaccc |
924 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9099 |
gtgaccatttagaagagagacctttagtgtgatcggaatgaagatgtgttaagaagtatgcttcactaccctttccccaacgatctactgatattaaccc |
9000 |
T |
|
| Q |
925 |
ttcttccatttttggtgatggagaaagaaacactaaaagtgtgaacctctttctttgaagcgtgtaagtgattatga |
1001 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8999 |
ttcttccatttttggtgatggagaaagaaacactaaaagtgtgaacctctttctttgaagc--ttaagtgattatga |
8925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 638 - 1001
Target Start/End: Complemental strand, 21909686 - 21909317
Alignment:
| Q |
638 |
gtaccgggacagtgacaggcgtcgatggcggtgacaatgacggtggtgggatcggaagaagaaggcgaacggagtgagagagtgtgagaagtgccagtat |
737 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| || |||||||||| |
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| T |
21909686 |
gtaccgggacagtgacaggcatcgatggcggtgacaatgacggtggtgggattggaagaagaaggtgaacggagtgagatagtgtgggaggtgccagtat |
21909587 |
T |
|
| Q |
738 |
gaagaatgcgaagaagggagagattgaaattgggaaatttgatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttaga |
837 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21909586 |
gaagaatgcggagaagagagagattgaaattggggaatttgattggaagtagtctggcggtgattggagagcagaagagtgggccatgtgaccatttaga |
21909487 |
T |
|
| Q |
838 |
agagagacctttagtgtgatcggaatgaagatgtgttaagaagtatgcttcactaccctttccccaacgatctactgatattaacccttcttccattttt |
937 |
Q |
| |
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||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||| || |||||||||||| |
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| T |
21909486 |
agaaaggcctttagtgtgatcggagtgaagatgtgttaagaaatatgcttcacttcctcttgcccaacgatctaccgatattaaaccatcttccattttt |
21909387 |
T |
|
| Q |
938 |
ggtgatggagaaagaaacact--------aaaagtgtgaacctctttctttgaagcgtgtaagtgattatga |
1001 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
21909386 |
ggtgacggagaaagaaacactgctgttaaaaaagtgtgaacctctttctttg--gagtgtaagtgatgatga |
21909317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 90 - 515
Target Start/End: Complemental strand, 21910658 - 21910236
Alignment:
| Q |
90 |
cttattcgatattcaataatccaaatttctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggc |
189 |
Q |
| |
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||||||||||||||| |||||| | |||| |||||||||||||||||||||| ||| |||||| ||| |||| ||| | ||| ||||||||| |||| |
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| T |
21910658 |
cttattcgatattcattaatcccattttccgaaccctaacacaattatcacagcatttctatcccaaattcataactcaatgaatgtttcaaattagggc |
21910559 |
T |
|
| Q |
190 |
caagaatgatagaattacaatgtacctgctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatc |
289 |
Q |
| |
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|| |||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21910558 |
-aacaatgatagaattgcaatgtacctgttgagccgcaacgctacgactaggaaattcataagtaggattagcataagtattatcaaggcaaacaacatc |
21910460 |
T |
|
| Q |
290 |
aacatcaccatcatgttcctcaagagcaacaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagc |
389 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||| | | | |||||||||||||||||||||| | ||||||||||||||||||| |||| |||| |
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| T |
21910459 |
aacaacaccatcatgttcctttagagcaacaccaagcatttctctagcaatccttgccttctcacaactaccttcccaacgaaaatcaccggtatgaagc |
21910360 |
T |
|
| Q |
390 |
acacaaccaaaatctccgcgaaaaagcaacataatcgaacctattccaaacactcacaacaaataacaaattaaacgacataactcaaatcacagctgta |
489 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||| |||||| || ||| |
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| T |
21910359 |
tcacaaccaaaatctccacgaaaaagcaacataatcgaacctattccaaaaact--caacaaataacaaatcaaacgacagaactgaaatcaaagtagta |
21910262 |
T |
|
| Q |
490 |
aaatagtcatcattaatactacttta |
515 |
Q |
| |
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|||||||| ||| || |||||||||| |
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|
| T |
21910261 |
aaatagtcgtcagtagtactacttta |
21910236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 760 - 838
Target Start/End: Complemental strand, 26728050 - 26727972
Alignment:
| Q |
760 |
attgaaattgggaaatttgatgggaagtagtcttgcggtgattggagagcagaagagtgggccatgtgaccatttagaa |
838 |
Q |
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|||||||||||| ||| |||||||||| ||| | || ||||||| ||||||||||||||||||||| || |||| |||| |
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| T |
26728050 |
attgaaattggggaatatgatgggaaggagtttggcagtgattgaagagcagaagagtgggccatgggagcattgagaa |
26727972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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