View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6786_low_10 (Length: 241)
Name: NF6786_low_10
Description: NF6786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6786_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 15309831 - 15309609
Alignment:
| Q |
19 |
aaaactcttcactccttgtgtctgtcttgaatgaactgaatctgtcccaccaatgcatacctctgtctttacgagtttgattgtcactcttgtgcaaagt |
118 |
Q |
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| T |
15309831 |
aaaactcttcactccttgtgtctgtcttgaatgaactgaatctgtcccaccaatgcatgcctctgtctttacgagtttgattgtcactcttgtgcaaagt |
15309732 |
T |
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| Q |
119 |
tacatcgaaaaacagtgccaatataccagcaacaaatgctcctgatgagaatgggacattgatcatgtcgttgaactgccaaaataagaaatatttaaca |
218 |
Q |
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| T |
15309731 |
tacatcgaaaaacagtgccaatataccagcaacaaatgctcctgatgagaatgggacattgatcatgtcgttgaactgccaaaataagaaatatttaaca |
15309632 |
T |
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| Q |
219 |
cttttaagtacttttgaacaaac |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
15309631 |
cttttaagtacttttgaacaaac |
15309609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 26471740 - 26471923
Alignment:
| Q |
19 |
aaaactcttcactccttgtgtctgtcttgaatgaactgaatctgtcccaccaatgcatacctctgtctttacgagtttgattgtcactcttgtgcaaagt |
118 |
Q |
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|||| |||||||||||||| ||||||||||| |||| ||| |||||||||||||||| ||||| |||||||| |||||||| || |||||||||| || |
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| T |
26471740 |
aaaattcttcactccttgtatctgtcttgaacgaacggaacttgtcccaccaatgcattcctctatctttacgtgtttgattatctttcttgtgcaacgt |
26471839 |
T |
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| Q |
119 |
tacatcgaaaaacagtgccaatataccagcaacaaatgctcctgatgagaatgggacattgatcatgtcgttgaactgccaaaa |
202 |
Q |
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||| || || |||| |||||||| || ||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
26471840 |
tacgtccaagaacattgccaataaactagcaacaaatgcttctgatgcaaatgggacattgatcatgtcattgaactgtcaaaa |
26471923 |
T |
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