View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6786_low_3 (Length: 660)

Name: NF6786_low_3
Description: NF6786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6786_low_3
NF6786_low_3
[»] chr3 (4 HSPs)
chr3 (1-195)||(39488298-39488489)
chr3 (282-548)||(39488577-39488836)
chr3 (579-620)||(36278125-36278166)
chr3 (578-618)||(42134944-42134984)
[»] chr2 (1 HSPs)
chr2 (562-628)||(29150445-29150511)
[»] chr7 (1 HSPs)
chr7 (562-630)||(42675302-42675370)
[»] chr4 (2 HSPs)
chr4 (566-626)||(31985045-31985105)
chr4 (405-446)||(20429912-20429953)
[»] chr8 (2 HSPs)
chr8 (566-629)||(2543089-2543152)
chr8 (579-630)||(14478122-14478173)
[»] chr5 (1 HSPs)
chr5 (562-611)||(38893819-38893868)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39488298 - 39488489
Alignment:
Q  1 caacattcctcttagtgtctctgacctgcatgcatgcaagaaaactgttcaaaatataggtgatcctaatcagactgtcagtttgaacttttgaacgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39488298 caacattcctcttagtgtctctgacctgcatgcatgcaagaaaactgttcaaaatataggtgatcctaatcagactgtctgtttgaacttttgaacgttg 39488397  T
Q  101 aatccttataattttaagtaagaaaatgtttcatccacatctgatatgagatttcacttggatatcattgatgtctttaatgtatatattttagg 195  Q
    |||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39488398 aatcc---taattttaagtaagaaaatgtttcatccacatctcatatgagatttcacttggatgtcattgatgtctttaatgtatatattttagg 39488489  T

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Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 282 - 548
Target Start/End: Original strand, 39488577 - 39488836
Alignment:
Q  282 aaaacattgtgaaaaatggatggacaccctttaagtttttacatactcgtttgatatactgacatgtgtcgaaacttgattgaaatacagtgccttatgt 381  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  39488577 aaaacattgtgaaaaatggatggacgccctttaagtttttacatactcgtttgatat--tgacatgtgtcgaaacttgattgaaatacagtgccttatgt 39488674  T
Q  382 gcttaattattgctagtttacaaaggtatcaaagaccaaatttataagtgcttactgtttttgccnnnnnnnntaat-aataaagaagtgtatattgttt 480  Q
    ||    ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||         ||| ||||||||||||||||||||||    
T  39488675 gc----ttactgctattttacaaaggtatcaaagaccaaatttataaatgcttactgtttttgccaaaaa----aataaataaagaagtgtatattgttt 39488766  T
Q  481 acaaaactgaa--cgtgtgagatttcttgtgtttcgtatatgccgtttgtggtactaaatagcagtactc 548  Q
    |||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  39488767 acaaaactgaatgcgcgtgagatttcttgtgtttcgtatatgccgtttgtcgtactaaacagcagtactc 39488836  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 36278125 - 36278166
Alignment:
Q  579 aaaagatatccacttatttgataaatgtatttcatcttattt 620  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  36278125 aaaagatattcacttatttgatagatgtatttcatcttattt 36278166  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 618
Target Start/End: Complemental strand, 42134984 - 42134944
Alignment:
Q  578 caaaagatatccacttatttgataaatgtatttcatcttat 618  Q
    ||||||||||||| |||||||||| ||||| ||||||||||    
T  42134984 caaaagatatccatttatttgatagatgtacttcatcttat 42134944  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 562 - 628
Target Start/End: Original strand, 29150445 - 29150511
Alignment:
Q  562 gtagaaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacactt 628  Q
    ||||||||| ||||||  |||||||||||||| ||||||| ||||||||| ||||||||| ||||||    
T  29150445 gtagaaataggaaagcttaaagatatccacttgtttgatagatgtatttcgtcttattttgacactt 29150511  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 630
Target Start/End: Complemental strand, 42675370 - 42675302
Alignment:
Q  562 gtagaaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacacttcc 630  Q
    |||||||| | |||| ||||||||||| |||| ||||||| | |||||| |||||||||| ||||||||    
T  42675370 gtagaaattaaaaagtcaaaagatatctacttgtttgatagaagtatttgatcttattttgacacttcc 42675302  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 31985045 - 31985105
Alignment:
Q  566 aaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacac 626  Q
    |||||||||||  |||||| ||| |||||||||||| ||||||||  ||||||||||||||    
T  31985045 aaataagaaagtaaaaagaaatcaacttatttgatagatgtattttgtcttattttcacac 31985105  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 20429953 - 20429912
Alignment:
Q  405 aggtatcaaagaccaaatttataagtgcttactgtttttgcc 446  Q
    |||| ||||| ||||||||||||||||||| |||||||||||    
T  20429953 aggtgtcaaataccaaatttataagtgcttgctgtttttgcc 20429912  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 629
Target Start/End: Complemental strand, 2543152 - 2543089
Alignment:
Q  566 aaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacacttc 629  Q
    ||||||||||| ||||||| ||| |||| ||||||| ||||||||  ||||||||| |||||||    
T  2543152 aaataagaaagtcaaaagacatctacttgtttgatagatgtattttgtcttattttgacacttc 2543089  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 630
Target Start/End: Original strand, 14478122 - 14478173
Alignment:
Q  579 aaaagatatccacttatttgataaatgtatttcatcttattttcacacttcc 630  Q
    |||||||||||| ||||||||||||||||| || ||||||||| | ||||||    
T  14478122 aaaagatatccatttatttgataaatgtatctcgtcttattttgatacttcc 14478173  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 611
Target Start/End: Complemental strand, 38893868 - 38893819
Alignment:
Q  562 gtagaaataagaaagccaaaagatatccacttatttgataaatgtatttc 611  Q
    ||||||||  ||||||||||| ||| |||||| |||||||||||||||||    
T  38893868 gtagaaatgggaaagccaaaaaatacccacttgtttgataaatgtatttc 38893819  T

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