View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6786_low_6 (Length: 404)
Name: NF6786_low_6
Description: NF6786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6786_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 399
Target Start/End: Complemental strand, 56046207 - 56045831
Alignment:
| Q |
23 |
gctgcaaggtaaccatcataggaaacactcatgttaaaatttcaaactcccattgctttcgcctcattgcttacgagaaaaagaaaagtgtagattatag |
122 |
Q |
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| T |
56046207 |
gctgcaaggtaaccatcataggaaacactcatgttaaaatttcaaactcctattgctttcgcctcattgcttacgagaaaaagaaaagtgtagattatag |
56046108 |
T |
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| Q |
123 |
gtggcagaaatattgaatggagttagtacctggttggtagttgcttggatgacaccgattgggagagttacaacaaaagctaagccaaaagcaaagagca |
222 |
Q |
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| T |
56046107 |
gtggcagaaatattgaatggagttagtacctggttggtagttgcttggatgacaccgattgggagagttacaacaaaagctaagccaaaagcaaagagca |
56046008 |
T |
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| Q |
223 |
tgccccaccatggaagttgcacatccgttttccaaacaaaagccattactaaggatagcgccatgcttccaaataataaaatgaggaaccaccattctgg |
322 |
Q |
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| T |
56046007 |
tgccccaccatggaagttgcacatccgttttccaaacaaaagccattactaaggatagcgccatgcttccaaataataaaatgaggaaccaccattctgg |
56045908 |
T |
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| Q |
323 |
tacttgcttataagccttcatgagcctaccatgcacatccactttgacgttacccattgccgatttactctgtctca |
399 |
Q |
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| T |
56045907 |
tacttgcttataagccttcatgagcctaccatgcacatcaacttttacgttacccattgccgatttactctgtctca |
56045831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 128 - 279
Target Start/End: Complemental strand, 55707400 - 55707250
Alignment:
| Q |
128 |
agaaatattgaatggagttagtacctggttggtagttgcttggatgacaccgattgggagagttacaacaaaagctaagccaaaagcaaagagcatgccc |
227 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| |
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| T |
55707400 |
agaaatattgattggagttagtgcctggttggtagttgcttggatgacaccgattgggagggttacaacaaaagcgaagccaaaagcaaagagcataccc |
55707301 |
T |
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| Q |
228 |
caccatggaagttgcacatccgttttccaaacaaaagccattactaaggata |
279 |
Q |
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||| || | |||||||||| |||||||| || ||||||||||||| ||||| |
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| T |
55707300 |
cacaatagcagttgcacatatgttttccacac-aaagccattactatggata |
55707250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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