View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6789_high_7 (Length: 392)
Name: NF6789_high_7
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 6399634 - 6399398
Alignment:
| Q |
20 |
agtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaaga |
119 |
Q |
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| T |
6399634 |
agtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaaga |
6399535 |
T |
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| Q |
120 |
ggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatggtgatggagatggtcttattgatttgaatgagtttacaagaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
6399534 |
ggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtgatggagatggtcttattgatttgaatgagtttacaaggat |
6399435 |
T |
|
| Q |
220 |
gatgataaatggcaagaaatgtgcctaagttatcata |
256 |
Q |
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| T |
6399434 |
gatgatgaatggcaagaaatgtgcctaagttatcata |
6399398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 6412868 - 6413104
Alignment:
| Q |
20 |
agtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaaga |
119 |
Q |
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| T |
6412868 |
agtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaaga |
6412967 |
T |
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| Q |
120 |
ggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatggtgatggagatggtcttattgatttgaatgagtttacaagaat |
219 |
Q |
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| T |
6412968 |
ggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtgatggagatggtcttattgatttgaatgagtttacaaggat |
6413067 |
T |
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| Q |
220 |
gatgataaatggcaagaaatgtgcctaagttatcata |
256 |
Q |
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| T |
6413068 |
gatgatgaatggcaagaaatgtgcctaagttatcata |
6413104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 6410124 - 6410358
Alignment:
| Q |
22 |
taagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagagg |
121 |
Q |
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| T |
6410124 |
taagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatgggaaaatcagtgctgaggaattgtctcaaatatttaagagg |
6410223 |
T |
|
| Q |
122 |
ttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatggtgatggagatggtcttattgatttgaatgagtttacaagaatga |
221 |
Q |
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| T |
6410224 |
ttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgatggagatggtcttattgatttgaatgagtttacaagaatga |
6410323 |
T |
|
| Q |
222 |
tgataaatggcaagaaatgtgcctaagttatcata |
256 |
Q |
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|||| ||||||||||||||||||||||| |||||| |
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| T |
6410324 |
tgatgaatggcaagaaatgtgcctaagtcatcata |
6410358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 249
Target Start/End: Complemental strand, 6403072 - 6402920
Alignment:
| Q |
82 |
gaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatggtgat |
181 |
Q |
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| T |
6403072 |
gaaaattagtgctgatgaattgtctcaaatatttaagaggttaggagagagttgtagccttagtt---------------tgaaaggtgtcgatggtgat |
6402988 |
T |
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| Q |
182 |
ggagatggtcttattgatttgaatgagtttacaagaatgatgataaatggcaagaaatgtgcctaagt |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||| |
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| T |
6402987 |
ggagatggtcttattgatttgaatgagtttacaaggatgatgatgagtggcaagaaatgtgtctaagt |
6402920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 6399340 - 6399291
Alignment:
| Q |
315 |
ggttacatgcttggtgattgtcattctttcaattttattctgtctatggt |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6399340 |
ggttacatgcttggtgattgtcattctttcaattttattctgtctttggt |
6399291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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