View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6789_high_9 (Length: 345)
Name: NF6789_high_9
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 31816644 - 31816316
Alignment:
| Q |
1 |
caattcaagatgaatttggtgatgagaacatcaattccaataccaacatagtgaaaaattacacagcacagccacaaaacaagtttactcctttggtgaa |
100 |
Q |
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| T |
31816644 |
caattcaagatgaatttggtgatgagaacatcaattccaataccaacatagtgaaaaattacacagcacagccacaaaacaagtttactcctttggtgaa |
31816545 |
T |
|
| Q |
101 |
caactcacttaatgttgcagctccgccattttatgcagcgaaatcatctttcaaggaatcaaatgagaatttgaatttgtcggagagacttaagagaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816544 |
caactcacttaatgttgcagctccgccattttatgcagcgaaatcatctttcaaggaatcaaatgagaatttgaatttgtcggagagacttaagagaaca |
31816445 |
T |
|
| Q |
201 |
aggtctggaaatgctgcaggattactgagagtggatgatgtgaacagcaacaaggtgaatgtggaattaggtgtgcctgggaacaaagcaagaaggcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816444 |
aggtctggaaatgctgcaggattactgagagtggatgatgtgaacagcaacaaggtgaatgtggaattaggtgtgcctgggaacaaagcaagaaggcttt |
31816345 |
T |
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| Q |
301 |
catttgagaagaataagttgtgtgatttg |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31816344 |
catttgagaagaataagttgtgtgatttg |
31816316 |
T |
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