View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6789_low_1 (Length: 623)
Name: NF6789_low_1
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 13 - 611
Target Start/End: Complemental strand, 45122919 - 45122322
Alignment:
| Q |
13 |
tggacatcacagctggtaacggtattgccgcggagttattcaaagagataatgcaagctctagaggatgtggacggaggaagaagctcaggtgactcatc |
112 |
Q |
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| T |
45122919 |
tggacatcacagctggtaacggtattgccgcggagttatctaaagagataatgcaagctctagaggatgtggacggaggaagaagctcaggtgactcatc |
45122820 |
T |
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| Q |
113 |
agagactacaatcatctcactgctactctcggtggcggcaactgcagctccagctaccggctgtgccatgaagtcacgaacaaactctttttcttcgtgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45122819 |
agagactacaatcatctcactgctactctcggtggcggcaacggcagctccagctaccggctgtgccatgaagtcacgaataaactctttttcttcgtgg |
45122720 |
T |
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| Q |
213 |
cacatctctaacaaatattccacatccatttcctataaaatcgtttgaattaaacaaagtactatattatactatacgtaatgaaaaacacaattaatat |
312 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
45122719 |
cacatctctaacaaatattccacacccatttcctgtaaaatcgtttgaattaaacaaagtactatattatactatacgta-tgaaaaacgcaattaatat |
45122621 |
T |
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| Q |
313 |
atttgtatcaatttatgctggaactcattaccgtttgaaaaggccaaacattttcccatgactgctccattagagagtgccagatattggtgactctcgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45122620 |
atttgtatcaatttatgctggaactcattaccgtttgaaaaggccaaacattttcccatgactgctccataagagagtgccagatattggtgactctcgt |
45122521 |
T |
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| Q |
413 |
atattgtttccacgatgaggataacattttactcaaaataaactagaaaatgcaataaatgttaatattgacttcacacaagtttgtccaaaactgaagt |
512 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45122520 |
atattgtttccacgatgaggataactttttactcaaaataaacttgaaaatgcaataaatgttaatattgacttcacacaagtttgtccaaaactgaagt |
45122421 |
T |
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| Q |
513 |
atcaaacttttattttgttgattagcttattaaaagtatcaaacaattatttttctattttatttaataagaaaaatataaggtgtgaggggatgatgt |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45122420 |
atcaaacttttattttgttgattagcttattaaaagtatcaaacaattatttttctattttatttaataagaaaaatataaggtgtgaggggatgatgt |
45122322 |
T |
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