View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6789_low_14 (Length: 355)
Name: NF6789_low_14
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_low_14 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 6255603 - 6255964
Alignment:
| Q |
9 |
attattcaccaaagcaacacatgtattttatgtgtgtcattcaagtatacatt-----ctttctg---------tgtgtat-tttcagcactgcttctgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | || ||| ||||||||||||||||| |
|
|
| T |
6255603 |
attattcaccaaagcaacacatgtattttctgtgtgtcattcaagtatacatttgcaactttgtcatgctcatctgagtaagtttcagcactgcttctgc |
6255702 |
T |
|
| Q |
94 |
ttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaattttattagaaaggttttataat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6255703 |
ttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaattttattagaaaggttttataat |
6255802 |
T |
|
| Q |
194 |
tagagatagagggagtaaaatgcttaatttttgcttgannnnnnnnatactgattcaatatcattcnnnnnnnntattaactactttttgaatttatgtg |
293 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6255803 |
tagagatagagggagtaaaatgcttgatttctgcttgatttttgttatactgattcaatatcattcaaaaaaaatattaactactttttgaatttatgtg |
6255902 |
T |
|
| Q |
294 |
gatttaggttcaatttccggtggataagatgagggcaaagtgagaaatggtcaaacatggat |
355 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
6255903 |
gatttaggttcaatttccagtggataagatgatgacaatgtgagaaatggtcaaacatggat |
6255964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 76 - 355
Target Start/End: Complemental strand, 43430558 - 43430279
Alignment:
| Q |
76 |
tttcagcactgcttctgtttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaatttta |
175 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
43430558 |
tttcagcactgcttctgcttgtggcagtccctttttgttaatgttaaagaggaattaactaactagttgtaatatatgtacttgttgatgcctaatttta |
43430459 |
T |
|
| Q |
176 |
ttagaaaggttttataattagagatagagggagtaaaatgcttaatttttgcttgannnnnnnnatactgattcaatatcattcnnnnnnnntattaact |
275 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
43430458 |
ttagaaaagttttataattagagattgatggagtaaaatgcttgatttttgcttgatttttgttatactgattaaatatcattcaaaaaaactattaact |
43430359 |
T |
|
| Q |
276 |
actttttgaatttatgtggatttaggttcaatttccggtggataagatgagggcaaagtgagaaatggtcaaacatggat |
355 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | ||| ||||| ||| ||||| ||| ||||||||||| ||||||| |
|
|
| T |
43430358 |
actttttgaatttacgtggatttaggttcaattttcagtgaataaggtgatggcaatgtgtgaaatggtcaagcatggat |
43430279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 76 - 355
Target Start/End: Complemental strand, 51208132 - 51207864
Alignment:
| Q |
76 |
tttcagcactgcttctgtttgtgggagtccctttttgttaatgttaaagaggaattaactagctagttgtaatgtatgtacttgttgttgcctaatttta |
175 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51208132 |
tttcagcactgcttctgcttgtggcagtccctttttgttaattttaaagagaaattaactagctagttgtaatatatgtacttgttgttgcctaatttta |
51208033 |
T |
|
| Q |
176 |
ttagaaaggttttataattagagatagagggagtaaaatgcttaatttttgcttgannnnnnnnatactgattcaatatcattcnnnnnnnntattaact |
275 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||| |||||||| |
|
|
| T |
51208032 |
ttaaaaaagttttataattagagatagagggagtaaaatgcttgatttttgtt-----------atactgattcaatgtcattcaaaaaaactattaact |
51207944 |
T |
|
| Q |
276 |
actttttgaatttatgtggatttaggttcaatttccggtggataagatgagggcaaagtgagaaatggtcaaacatggat |
355 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | ||||||||||||| | | | |||||||||| |||| ||||||| |
|
|
| T |
51207943 |
actttttgaatttatgtagatttaggttcaattttcagtggataagatgacgaccatgtgagaaatgctcaagcatggat |
51207864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 51208214 - 51208162
Alignment:
| Q |
9 |
attattcaccaaagcaacacatgtattttatgtgtgtcattcaagtatacatt |
61 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
51208214 |
attattcaccaaagcaacacatgtactttctgtgtgtcattcaagtatacatt |
51208162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 43430640 - 43430588
Alignment:
| Q |
9 |
attattcaccaaagcaacacatgtattttatgtgtgtcattcaagtatacatt |
61 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
43430640 |
attattcaccaaagcaacacatgtactttctgtgtgtcattcaagtattcatt |
43430588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 48074200 - 48074115
Alignment:
| Q |
133 |
actagctagttgtaatgtatgtacttgttgttg-cctaattttattagaaaggttttataattagagatagagggagtaaaatgct |
217 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
48074200 |
actagttagttgaaatatatgtacttgttgtttacctaattttattagaaaagttttataattagagatagaggaagtaaaatgct |
48074115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 43956323 - 43956369
Alignment:
| Q |
11 |
tattcaccaaagcaacacatgtattttatgtgtgtcattcaagtata |
57 |
Q |
| |
|
|||||||||| |||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
43956323 |
tattcaccaaggcaacacatgcactttctgtgtgtcattcaagtata |
43956369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University