View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6789_low_17 (Length: 314)
Name: NF6789_low_17
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 32033669 - 32033950
Alignment:
| Q |
20 |
gtgtgatcgctatgcgatcctatgattcacctagtgcagttgcatttaactatcgttcttcataggattaga--tcgtgattgttgttacgaccgggatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
32033669 |
gtgtgatcgctatgcgatcctatgattcacctagtgtagttgcatttaactatcgttcttcataggaatagaaatcgtgattgttactacgaccgggatt |
32033768 |
T |
|
| Q |
118 |
ttaaatcttatttatttacattatagttgattaataacaacctagtatgcaacatgcagttttctcgtagcacaagcaatatcatgatgttatggaggtg |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32033769 |
ttaaatcttaattatttacattatagttgattaataacaacgtagtatgcaacatgcagttttctcgtaccacaagcaatatcatgatgttatggaggtg |
32033868 |
T |
|
| Q |
218 |
agtcaccaagactacattcactgcaacataaattctgcaaaggccttttaccactctggctctgattccatcaacctcacca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32033869 |
agtcaccaagactacattcactgcaacataaattctgcaaaggccttttaccactctggctctgattccatcaacctcacca |
32033950 |
T |
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