View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6789_low_2 (Length: 564)
Name: NF6789_low_2
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 10 - 553
Target Start/End: Complemental strand, 10079074 - 10078531
Alignment:
| Q |
10 |
ggacatcatcatgtcgtgaattattttctggaccgagttctgagcatcattactagggtcggcttcaccagaaacagatgcctgctgttgttgcatggaa |
109 |
Q |
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| T |
10079074 |
ggacatcatcatgtcgtgaattattttctggaccgagttctgagcatcattactagggtcagcttcaccagaaacagatgcctgctgttgttgcatggaa |
10078975 |
T |
|
| Q |
110 |
atattagctggtgagtttactgtacccatgtgatttgcagatgttaagccagggtgagaagtttgtgggttgttgttagatgaggacggtgttggtgaat |
209 |
Q |
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| T |
10078974 |
atattagctggtgagtttactgtacccatgtgatttgcagatgttaagccagggtgagaagtttgcgggttgttgttagatgaggacggtgttggtgaat |
10078875 |
T |
|
| Q |
210 |
gaaaaggggacgagtttggttgtgcctgtggcactgtactgcatgaacctggggatggaatatgagctgaactacctccatatggactgcttgcattgtt |
309 |
Q |
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| T |
10078874 |
gaaaaggggacgagtttggttgtgcctgtggcactgtactgcatgaacctggggatggaatatgagctgaactacctccatatggactgcttgcattgtt |
10078775 |
T |
|
| Q |
310 |
cattgaattttgctgtctagcgttcatagagttctggtggagaagtccaacaatggtgcttgtggtggtcgatgcagatgctgaattgacattgttattt |
409 |
Q |
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| T |
10078774 |
cattgaattttgctgtctagcgttcatagagttctggtggagaagtccaacaatggtgcttgtggtggtcgatgcagatgctgaattgacattgttattt |
10078675 |
T |
|
| Q |
410 |
acacttaccacaccattgttagaagggacttgcatagcagcagcttgcacagagttttgatcaccatttgagttgggggccaccatatgctgctgttgct |
509 |
Q |
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| T |
10078674 |
acacttaccacaccattgttagaagggacttgcatagcagcagcttgcacagagttttgatcaccatttgagttgggggccaccatatgctgttgttgct |
10078575 |
T |
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| Q |
510 |
gctgtaattgttcttcagactgttgcgcctgattatgatgtcca |
553 |
Q |
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| T |
10078574 |
gctgtaattgatcttcagactgttgcgcctgattatgatgtcca |
10078531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 170 - 483
Target Start/End: Original strand, 40776005 - 40776318
Alignment:
| Q |
170 |
gtttgtgggttgttgttagatgaggacggtgt---tggtgaatgaaaaggggacgagtttggttgtgcctgtggcactgtactgcatgaacctggggatg |
266 |
Q |
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| T |
40776005 |
gtttgtggggggttattagatgaggatggtgtaggtggtgactgaaaaggggatgagtttggctgggcctgtggcacagtactggaggaaccaggggatg |
40776104 |
T |
|
| Q |
267 |
gaatatgagctgaactacctccatatggactgcttgcattgttcattgaattttgctgtctagcgttcatagagttctggtggagaagtccaacaatggt |
366 |
Q |
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| T |
40776105 |
gaatctgaacagaattacctccatatggactgcttgcattgttcattgaattt---tgtctagaattcacagagttttggtggagaagtccaacaatagt |
40776201 |
T |
|
| Q |
367 |
gcttgtggtggtcgatgcagatgctgaattgacattgttatttacacttaccacaccattgttagaagggacttgcatagcagcagcttgcacagagttt |
466 |
Q |
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||||||||| || ||||| || || || |||||| |||||||||| |||| ||||||| | |||| | |||||| | |||||||||||| | |||| |
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| T |
40776202 |
gcttgtggttgttgatgcggacgccgagttgacagaactatttacactaaccataccattgctggaagcaatttgcatggaagcagcttgcactgggttt |
40776301 |
T |
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| Q |
467 |
tgatcaccatttgagtt |
483 |
Q |
| |
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||||| ||||||||||| |
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| T |
40776302 |
tgatcgccatttgagtt |
40776318 |
T |
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