View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6789_low_20 (Length: 240)
Name: NF6789_low_20
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 54988292 - 54988072
Alignment:
| Q |
20 |
accagataccgatgatattgatcaacagtaacatcgccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagt |
119 |
Q |
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| T |
54988292 |
accagataccgatgatattgatcaacagtaacatcaccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagt |
54988193 |
T |
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| Q |
120 |
atgaaaaattgatatctagaagacactgaaatgttgttatcatgacctggtttatgagtgaagacatcccagtcgctcaaacctttgccatcactcaagt |
219 |
Q |
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| T |
54988192 |
atgaaaaattgatatctagaagacacggaaatgttgttatcatgacctggtttatgagtgaagacatcccagttgctcaaacctttgccatcactcaagt |
54988093 |
T |
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| Q |
220 |
aagcaccttcatactataata |
240 |
Q |
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||||||||||||||||||||| |
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| T |
54988092 |
aagcaccttcatactataata |
54988072 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 7918865 - 7918832
Alignment:
| Q |
201 |
cctttgccatcactcaagtaagcaccttcatact |
234 |
Q |
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| T |
7918865 |
ccttttccatcactcaagtaagcaccttcatact |
7918832 |
T |
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