View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6789_low_22 (Length: 214)

Name: NF6789_low_22
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6789_low_22
NF6789_low_22
[»] chr3 (2 HSPs)
chr3 (1-99)||(39752808-39752906)
chr3 (158-196)||(39752714-39752752)
[»] chr5 (1 HSPs)
chr5 (2-53)||(25705960-25706011)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 39752906 - 39752808
Alignment:
Q  1 ttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagcaacagattcctataacaatggtggaaattagcatgaaaggaacggc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39752906 ttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagcaacagattcctataacaatggtggaaattagcatgaaaggaacggc 39752808  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 39752752 - 39752714
Alignment:
Q  158 tttatttactcacagtaagggcaacaacagcaacaatta 196  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39752752 tttatttactcacagtaagggcaacaacagcaacaatta 39752714  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 25705960 - 25706011
Alignment:
Q  2 tgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagc 53  Q
    |||| ||||||||||||||||||||||| || || |||||||| ||||||||    
T  25705960 tgttcccatcaagttggtatcctttgatggaagcgaaagatcggccaacagc 25706011  T

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