View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6789_low_4 (Length: 488)

Name: NF6789_low_4
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6789_low_4
NF6789_low_4
[»] chr3 (4 HSPs)
chr3 (19-418)||(41209705-41210104)
chr3 (437-466)||(37303378-37303407)
chr3 (437-466)||(46473123-46473152)
chr3 (438-466)||(49457561-49457589)
[»] chr4 (2 HSPs)
chr4 (437-466)||(54800993-54801022)
chr4 (438-466)||(42516646-42516674)
[»] chr8 (3 HSPs)
chr8 (438-466)||(5740821-5740849)
chr8 (438-466)||(22852886-22852914)
chr8 (438-466)||(42996485-42996513)
[»] chr6 (2 HSPs)
chr6 (438-466)||(29383553-29383581)
chr6 (438-466)||(31517216-31517244)
[»] chr5 (4 HSPs)
chr5 (438-466)||(23991181-23991209)
chr5 (436-464)||(26685685-26685713)
chr5 (436-464)||(26955416-26955444)
chr5 (438-466)||(27392749-27392777)
[»] chr2 (1 HSPs)
chr2 (440-472)||(19668224-19668256)
[»] chr1 (1 HSPs)
chr1 (438-466)||(44112450-44112478)


Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 41210104 - 41209705
Alignment:
Q  19 cttcagactttgtctggttaattaccttgggcattcctatgtcaggtttgtaaaaacagacatgaattgtgagccgaatacgtaaattatgatcctttat 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41210104 cttcagactttgtctggttaattacctcgggcattcctatgtcaggtttgtaaaaacagacatgaattgtcagccgaatacgtaaattatgatcctttat 41210005  T
Q  119 tattatggatgaacaatacgagtaagtcacagtaattgccaccaaaataattctagagttgatgtcacaaaattaatataagtaccaaaaatgtctcgat 218  Q
    ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41210004 tattatggatggacaatatgaataagtcacagtaattgccaccaaaataattctagagttgatgtcacaaaattaatataagtaccaaaaatgtctcgat 41209905  T
Q  219 tatttttatacatcgtaaaagtggtagacagaatgtaattattgccccaacttccatgcatagaataatagaaccaacctatggagattggtgaaagagt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41209904 tatttttatacatcgtaaaagtggtagacagaatgtaattattgccccaacttccatacatagaataatagaaccaacctatggagattggtgaaagagt 41209805  T
Q  319 tgttcaaaatctggtgaacacgaagtaaaatgaagtaacttctgaattttatactataaatatcatgtgatgaaaggtgataccatcaatgtttgacaag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41209804 tgttcaaaatctggtgaacacgaagtaaaatgaagtaacttctgaattttatactataaatatcatgtgatgaaaggtgataccatcaatgtttgacaag 41209705  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 466
Target Start/End: Original strand, 37303378 - 37303407
Alignment:
Q  437 attaagagaaatgatatttgtacaaccact 466  Q
    ||||||||||||||||||||||||||||||    
T  37303378 attaagagaaatgatatttgtacaaccact 37303407  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 466
Target Start/End: Original strand, 46473123 - 46473152
Alignment:
Q  437 attaagagaaatgatatttgtacaaccact 466  Q
    ||||||||||||||||||||||||||||||    
T  46473123 attaagagaaatgatatttgtacaaccact 46473152  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 49457561 - 49457589
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  49457561 ttaagagaaatgatatttgtacaaccact 49457589  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 466
Target Start/End: Original strand, 54800993 - 54801022
Alignment:
Q  437 attaagagaaatgatatttgtacaaccact 466  Q
    ||||||||||||||||||||||||||||||    
T  54800993 attaagagaaatgatatttgtacaaccact 54801022  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 42516646 - 42516674
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  42516646 ttaagagaaatgatatttgtacaaccact 42516674  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 5740849 - 5740821
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  5740849 ttaagagaaatgatatttgtacaaccact 5740821  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 22852914 - 22852886
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  22852914 ttaagagaaatgatatttgtacaaccact 22852886  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 42996485 - 42996513
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  42996485 ttaagagaaatgatatttgtacaaccact 42996513  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 29383553 - 29383581
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  29383553 ttaagagaaatgatatttgtacaaccact 29383581  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 31517244 - 31517216
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  31517244 ttaagagaaatgatatttgtacaaccact 31517216  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 23991209 - 23991181
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  23991209 ttaagagaaatgatatttgtacaaccact 23991181  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 464
Target Start/End: Original strand, 26685685 - 26685713
Alignment:
Q  436 cattaagagaaatgatatttgtacaacca 464  Q
    |||||||||||||||||||||||||||||    
T  26685685 cattaagagaaatgatatttgtacaacca 26685713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 464
Target Start/End: Original strand, 26955416 - 26955444
Alignment:
Q  436 cattaagagaaatgatatttgtacaacca 464  Q
    |||||||||||||||||||||||||||||    
T  26955416 cattaagagaaatgatatttgtacaacca 26955444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 27392777 - 27392749
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  27392777 ttaagagaaatgatatttgtacaaccact 27392749  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 472
Target Start/End: Complemental strand, 19668256 - 19668224
Alignment:
Q  440 aagagaaatgatatttgtacaaccactgtgaca 472  Q
    ||||||||||||||||||||||||||| |||||    
T  19668256 aagagaaatgatatttgtacaaccactttgaca 19668224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 44112450 - 44112478
Alignment:
Q  438 ttaagagaaatgatatttgtacaaccact 466  Q
    |||||||||||||||||||||||||||||    
T  44112450 ttaagagaaatgatatttgtacaaccact 44112478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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