View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6789_low_8 (Length: 450)
Name: NF6789_low_8
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6789_low_8 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 13588 - 13174
Alignment:
| Q |
19 |
aaaacttccaagatctctttccttcaatttcctttgtaatatggacaatgcaaaagcttactcaagtgaccaattctacaatgagttctatgatatcttg |
118 |
Q |
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| T |
13588 |
aaaacttccaagatctctttccttcaatttcctttgtaatatggacaatgcaaaagcttactcaagtgaccaattctacaatgagttctatgatatcttg |
13489 |
T |
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| Q |
119 |
caatctgatctcagcacaatgaagatgtttggtaaaggaaaagagcctgcaatggaagatgctgcaagaagtggaaacttcgtgtgtttttcgaaacaaa |
218 |
Q |
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| T |
13488 |
caatctgatctcagcacaatgaagatgtttggtaaaggaaaagagcctgcaatggaagatgctgcaagaagtggaaacttcgtgtgtttttcgaaacgaa |
13389 |
T |
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| Q |
219 |
gtccacaaaaaagcgcttatgaaggtagcgtacgatcacaactgaggaaaaaggaggatctgaattcacaaaacacgaataagggagcacatgtgttagc |
318 |
Q |
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| T |
13388 |
gtccacaaaaaagcgcttatgaaggtagcgtacaatcacaactgaggaaaaaggaggatctgaattcacaaaacacgaataagggagcacatgtgttagc |
13289 |
T |
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| Q |
319 |
acagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcgccttaaaagtcca |
418 |
Q |
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| T |
13288 |
acagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcgccttaaaagtcca |
13189 |
T |
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| Q |
419 |
gtttatctcgatatt |
433 |
Q |
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| T |
13188 |
gtttatctcgatatt |
13174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 280 - 433
Target Start/End: Complemental strand, 7743 - 7590
Alignment:
| Q |
280 |
gaattcacaaaacacgaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacata |
379 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||| || |||||||| |
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| T |
7743 |
gaattcacaaaacatgaataagggagcacatgtgttagcacagaagatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatc |
7644 |
T |
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| Q |
380 |
gaagaagcacttcactactattctcgccttaaaagtccagtttatctcgatatt |
433 |
Q |
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| T |
7643 |
gaagaagcacttcactactattctcgccttaaaagtccggtttatctagatatt |
7590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 43879078 - 43879161
Alignment:
| Q |
322 |
gaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcg |
405 |
Q |
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|||||||||| || |||| |||| || ||||||||| ||||||| || ||||| |||||||||||||||||||| |||||||| |
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| T |
43879078 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcg |
43879161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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