View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6789_low_9 (Length: 439)

Name: NF6789_low_9
Description: NF6789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6789_low_9
NF6789_low_9
[»] scaffold0133 (4 HSPs)
scaffold0133 (26-424)||(7727-8131)
scaffold0133 (234-413)||(12283-12462)
scaffold0133 (33-199)||(12106-12269)
scaffold0133 (249-413)||(17504-17668)
[»] chr6 (15 HSPs)
chr6 (229-424)||(16986883-16987078)
chr6 (229-413)||(16787396-16787580)
chr6 (36-199)||(16986711-16986874)
chr6 (33-199)||(16787221-16787387)
chr6 (255-413)||(16657467-16657625)
chr6 (35-199)||(16657268-16657432)
chr6 (306-413)||(16796675-16796782)
chr6 (306-413)||(17069012-17069119)
chr6 (304-413)||(16868548-16868657)
chr6 (328-413)||(16780627-16780712)
chr6 (28-199)||(17068752-17068923)
chr6 (33-199)||(16796417-16796586)
chr6 (304-366)||(18806791-18806853)
chr6 (304-366)||(18873785-18873847)
chr6 (26-78)||(16843050-16843102)
[»] scaffold0144 (3 HSPs)
scaffold0144 (229-413)||(36919-37103)
scaffold0144 (28-199)||(36739-36910)
scaffold0144 (34-138)||(35319-35423)
[»] chr2 (1 HSPs)
chr2 (26-185)||(20153688-20153846)
[»] chr3 (3 HSPs)
chr3 (249-413)||(7053814-7053978)
chr3 (306-413)||(38939907-38940014)
chr3 (121-194)||(7054015-7054088)
[»] chr8 (2 HSPs)
chr8 (26-190)||(13377336-13377500)
chr8 (306-413)||(13377598-13377705)
[»] scaffold0256 (1 HSPs)
scaffold0256 (244-413)||(8595-8764)
[»] scaffold0511 (1 HSPs)
scaffold0511 (304-366)||(8857-8919)
[»] scaffold0230 (1 HSPs)
scaffold0230 (304-366)||(4176-4238)


Alignment Details
Target: scaffold0133 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 26 - 424
Target Start/End: Original strand, 7727 - 8131
Alignment:
Q  26 cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacac 125  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  7727 cataaatttccaagtacctcaaatgcactaaactcttcaataatgagagttcatttgaacgtgtaagcaaaactcgaagagaggtgcttgacagaaacac 7826  T
Q  126 atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgtggt------ttgatttttgaaaaaag 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| ||||||||    
T  7827 atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgtggtcatattttgattttagaaaaaag 7926  T
Q  220 agacttaaatttggttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttccca 319  Q
    | || || |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||    
T  7927 aaacctatatttggttttttatcaaagatacttaaatggtgaacgccaattgacacattagtcgaatctgaaacatcataagaaatacattctttttcca 8026  T
Q  320 taatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8027 taatagactgagctaaatcatggataaaatcatgcattcggaatgtaatgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaa 8126  T
Q  420 ttgat 424  Q
    |||||    
T  8127 ttgat 8131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 12283 - 12462
Alignment:
Q  234 ttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagct 333  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| || |||| |||| ||||  ||||||||||||| | |||||||||||||   |||    
T  12283 ttttttatcaaagagacttatatggtgaactctaattgacaaatttgttaaatttgaagcatctgaagaaatacattcatctcccataatagacactgct 12382  T
Q  334 aaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
    |||||||||| |||||||||||||  ||| ||| |||||||| | ||||| ||||||||||||| ||| ||||| |||||    
T  12383 aaatcatggacaaaatcatgcattttgaaagtaatgttacctacaaaatctgatttaacttcttcaaataatgacctttg 12462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 12106 - 12269
Alignment:
Q  33 ttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaa 132  Q
    |||||||||||||||||||| ||||   ||  ||||||||||| |||  ||   |||||| ||| ||||||| |  ||| |||| ||||||||||||| |    
T  12106 ttccaagtacctcaaatgcattaaa---tttgatgatgagagtcgatgagactttgtatgtaaagctcgaagcgaagtggttgatagaaacacatctaga 12202  T
Q  133 ttcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  12203 ttctttgagggtggtttatactcaagaaaggttcgcaaggaatcaaatttttggaagggaatcatgt 12269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 413
Target Start/End: Original strand, 17504 - 17668
Alignment:
Q  249 acttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatggataaaa 348  Q
    ||||| ||||||||||| ||||||||||| || |||   |||||| | | |||  | |||||||| ||| ||||| || ||||||||||||||||  |||    
T  17504 acttatatggtgaactctaattgacaaatcagccaagcttgaaaccttagaagccacacattcttctccaataatggaatgagctaaatcatggactaaa 17603  T
Q  349 tcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
    |||||||||  ||||||| |||||||| | ||||| ||||| ||||||||||| ||||| |||||    
T  17604 tcatgcattttgaatgtaatgttacctacaaaatctgatttgacttcttgaaagaatgacctttg 17668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 229 - 424
Target Start/End: Original strand, 16986883 - 16987078
Alignment:
Q  229 tttggttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagact 328  Q
    |||| |||||||||||||||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |    
T  16986883 tttgattttttatcaaagagactcatatggtgaactctaattgacaaattagtcaactttgaaacatcataagaaatacattcttctcccataatagatt 16986982  T
Q  329 gagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgat 424  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  16986983 gagctaaatcatggataaaatcatgcattttgaatgtaatgttacctgttaaatcagatttaacttcttgaaaaaatgatctttgccataattgat 16987078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 229 - 413
Target Start/End: Original strand, 16787396 - 16787580
Alignment:
Q  229 tttggttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagact 328  Q
    |||| ||| |||||||||||||||| ||||||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| |||||    
T  16787396 tttgatttgttatcaaagagacttatatggtgaactctaattgaaaaattagtcaactttgagacatcataagaaatacattcttctcccataaaagact 16787495  T
Q  329 gagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
    || ||||||||||||||||||||||||||  ||||||| |||||||  | ||||| ||||||||||||||||||||||| |||||    
T  16787496 gacctaaatcatggataaaatcatgcattttgaatgtaatgttaccaacaaaatctgatttaacttcttgaaaaaatgacctttg 16787580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 16986711 - 16986874
Alignment:
Q  36 caagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaattc 135  Q
    ||||||||||||||||| |||||||||||||||||| |||||||  |||| |||||| ||| |||||||||| ||  |||| || | | ||| |||||||    
T  16986711 caagtacctcaaatgcattaaactcttcaatgatgatagttgatgagaacttgtatgtaaagctcgaagaggagtttttgatagtagcgcatttaaattc 16986810  T
Q  136 ttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 199  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  16986811 ttggagggttgtttatactcaagaaaggttcgcaaggaatcaactttttggcagggaatcatgt 16986874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 16787221 - 16787387
Alignment:
Q  33 ttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaa 132  Q
    ||||||||||||||| || | ||||||| ||||||||||||||||||   ||| || ||| ||| |||||||||||||||| || || |||| || |||     
T  16787221 ttccaagtacctcaagtgaattaaactcatcaatgatgagagttgatgaaaacttgcatgtaaagctcgaagaggggtgctagatagcaacatatttaag 16787320  T
Q  133 ttcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 199  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  16787321 ttcttggaaggtggtttatactcaagaaaggttcgcaaggaatcaaatttttggaagggaatcatgt 16787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 255 - 413
Target Start/End: Original strand, 16657467 - 16657625
Alignment:
Q  255 atggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatggataaaatcatgc 354  Q
    ||||||||||| ||||| |||||||||||| | |||||||||| |||| | |||||||| |||||||||||||||||||||||||||||  |||||||||    
T  16657467 atggtgaactctaattggcaaattagtcaactttgaaacatcacaagagacacattcttctcccataatagactgagctaaatcatggactaaatcatgc 16657566  T
Q  355 attcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
    |||   |||||| |||||||| ||||||| ||||  ||||||||||||||||| |||||    
T  16657567 attttaaatgtaatgttacctactaaatctgattcgacttcttgaaaaaatgacctttg 16657625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 16657268 - 16657432
Alignment:
Q  35 ccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaatt 134  Q
    |||||||||||||||| | |||| |||||||||| ||||||||||  |||| | ||   ||| |||| ||||| |||||||| |||||| ||||||||||    
T  16657268 ccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaacttatacataaagctcggagaggagtgcttgatagaaacgcatctaaatt 16657367  T
Q  135 cttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 199  Q
    |||| | ||| |  |||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  16657368 cttgcaaggtcgcgtatactcaaggaaagttcgcaaggaatcaactttttggaagggaatcatgt 16657432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 413
Target Start/End: Original strand, 16796675 - 16796782
Alignment:
Q  306 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 405  Q
    |||||||| | |||||| ||||| |||||||||||| |  ||||||||||||  ||||||| |||||||||||||||| ||||| |||||||||||||||    
T  16796675 acattcttctaccataacagacttagctaaatcatgcactaaatcatgcattttgaatgtaatgttacctgctaaatctgatttgacttcttgaaaaaat 16796774  T
Q  406 gatctttg 413  Q
    || |||||    
T  16796775 gacctttg 16796782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 413
Target Start/End: Original strand, 17069012 - 17069119
Alignment:
Q  306 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 405  Q
    |||||||| ||| |||| ||||| ||||||||||||||  ||||||||||||   |||||| |||||||||||||||| ||||| |||||||||||||||    
T  17069012 acattcttctccaataacagacttagctaaatcatggactaaatcatgcattttaaatgtaatgttacctgctaaatctgatttgacttcttgaaaaaat 17069111  T
Q  406 gatctttg 413  Q
    || |||||    
T  17069112 gacctttg 17069119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 16868657 - 16868548
Alignment:
Q  304 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaa 403  Q
    |||||||||| ||| |||| ||||| ||||||||||||||  ||||||||||||  ||||||| |||||||| ||||||| ||||| | |||||||||||    
T  16868657 atacattcttctccaataacagacttagctaaatcatggactaaatcatgcattttgaatgtaatgttacctactaaatctgatttgatttcttgaaaaa 16868558  T
Q  404 atgatctttg 413  Q
    |||| |||||    
T  16868557 atgacctttg 16868548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 16780627 - 16780712
Alignment:
Q  328 tgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
    ||||||||||||||||  ||||||||||||  ||||||| |||||||| | ||||| ||||||||||||||||||||||| |||||    
T  16780627 tgagctaaatcatggactaaatcatgcattttgaatgtaatgttacctacaaaatctgatttaacttcttgaaaaaatgacctttg 16780712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 17068752 - 17068923
Alignment:
Q  28 taaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacat 127  Q
    |||| |||||||||||||||||| | |||| |||||||||| ||||||||||  |||| || | | ||| |||| ||||   || | || || |||||||    
T  17068752 taaagttccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaacctgaacgtaaagctcggagagaaatgatcgatagcaacacat 17068851  T
Q  128 ctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 199  Q
    || || | ||| ||| |||||||   |||||||||||||||||||| |||||||||| ||| ||||| ||||    
T  17068852 ctgaacttttgtaggttggtttaagttcaagaaaggttcgcaaggattcaacttttttgaaaggaatcatgt 17068923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 16796417 - 16796586
Alignment:
Q  33 ttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaa 132  Q
    |||||||||||||| ||| | |||| |||||||||| |||| ||||   |||| |||| | ||| |||| |||||   | ||||  | ||||||||||||    
T  16796417 ttccaagtacctcacatgtattaaattcttcaatgaagagaattgacaagaacttgtacgtaaagctcggagaggaacgattgatggcaacacatctaaa 16796516  T
Q  133 ttcttggagg---gtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 199  Q
    ||  ||| ||   |||||||| | |||||||||||||||||||| |||||||||| ||| ||||| ||||    
T  16796517 tttatggtggtgggtggtttaaattcaagaaaggttcgcaaggattcaacttttttgaaaggaatcatgt 16796586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 18806853 - 18806791
Alignment:
Q  304 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 366  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  18806853 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 18806791  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 18873847 - 18873785
Alignment:
Q  304 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 366  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  18873847 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 18873785  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 16843050 - 16843102
Alignment:
Q  26 cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttga 78  Q
    |||||| |||||||||||||||||| | |||| ||||||| | ||||||||||    
T  16843050 cataaagttccaagtacctcaaatggattaaattcttcaaggctgagagttga 16843102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 229 - 413
Target Start/End: Original strand, 36919 - 37103
Alignment:
Q  229 tttggttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagact 328  Q
    |||| ||| |||||||| || || | ||||||||||| ||||| |||||||||||| | |||||||||| |||| | |||||||| ||||||||||||||    
T  36919 tttgatttgttatcaaacagcctgatatggtgaactctaattggcaaattagtcaactttgaaacatcacaagagacacattcttctcccataatagact 37018  T
Q  329 gagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
    |||||||||||||||  ||||||||||||  ||||||| |||||||||||||||| ||||  ||||||||||||||||| |||||    
T  37019 gagctaaatcatggactaaatcatgcattttgaatgtaatgttacctgctaaatctgattcgacttcttgaaaaaatgacctttg 37103  T

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Target: scaffold0144; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 36739 - 36910
Alignment:
Q  28 taaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacat 127  Q
    |||| |||||||||||||||||| | |||| |||||||||| ||||||||||  ||||  ||| | ||| |||| ||||| |||||||| || ||| |||    
T  36739 taaagttccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaactggtacgtaaagctcggagaggagtgcttgatagcaacgcat 36838  T
Q  128 ctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 199  Q
    ||||||||||| | ||| |  |||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  36839 ctaaattcttgcaaggtcgcgtatactcaaggaaagttcgcaaggaatcaacattttggaagggaatcatgt 36910  T

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Target: scaffold0144; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 35319 - 35423
Alignment:
Q  34 tccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacacatctaaat 133  Q
    ||||||||||||||||| | |||| |||||||||| ||||||||||  |||| ||||   ||| |||| ||||| |||||||| || ||| |||||||||    
T  35319 tccaagtacctcaaatgtattaaattcttcaatgacgagagttgataagaacttgtacataaagctcggagaggagtgcttgatagcaacgcatctaaat 35418  T
Q  134 tcttg 138  Q
    |||||    
T  35419 tcttg 35423  T

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Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 20153688 - 20153846
Alignment:
Q  26 cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacac 125  Q
    |||||| |||||||||||||||||| | |||| |||||| || ||||||||||   | || |||| | ||| |||| ||||| |||||||| || |||||    
T  20153688 cataaagttccaagtacctcaaatgtattaaagtcttcattgttgagagttgaaaaggacttgtacgtaaagctcggagaggagtgcttgataggaacac 20153787  T
Q  126 atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttg 185  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20153788 at-taaattcttggagggtggtttatactcaagaaaggtccgcaaggaatcaactttttg 20153846  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 413
Target Start/End: Complemental strand, 7053978 - 7053814
Alignment:
Q  249 acttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatggataaaa 348  Q
    ||||| ||||||||||| |||||||||||  | |||   |||||| ||| |||  | |||||||| ||||||||| ||||||||||||||||| |  |||    
T  7053978 acttatatggtgaactctaattgacaaatcggccaagcttgaaacctcagaagccacacattcttctcccataatggactgagctaaatcatgaaccaaa 7053879  T
Q  349 tcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
    |||||||||   |||||| |||| ||| ||| |||||||||||||||||||||||||||||||||    
T  7053878 tcatgcattttaaatgtaatgttccctactatatcagatttaacttcttgaaaaaatgatctttg 7053814  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 413
Target Start/End: Complemental strand, 38940014 - 38939907
Alignment:
Q  306 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 405  Q
    |||||||| |||||| | ||||||||||||||||||||| ||||||||||||  ||||||| |||||||| | ||||| ||||| |||||||||||||||    
T  38940014 acattcttctcccattacagactgagctaaatcatggattaaatcatgcattttgaatgtaatgttacctacaaaatctgatttgacttcttgaaaaaat 38939915  T
Q  406 gatctttg 413  Q
    || |||||    
T  38939914 gacctttg 38939907  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 7054088 - 7054015
Alignment:
Q  121 aacacatctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagggaat 194  Q
    ||||||||||| || |||| || |||| || |||||||||||||||||||||| |||| ||| | |||||||||    
T  7054088 aacacatctaattttttggtggatggtctaaactcaagaaaggttcgcaaggattcaattttattgaagggaat 7054015  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 13377336 - 13377500
Alignment:
Q  26 cataaatttccaagtacctcaaatgcactaaactcttcaatgatgagagttgatttgaacgtgtatgcaaaactcgaagaggggtgcttgacagaaacac 125  Q
    |||||| |||||||||||||| ||| | || | ||||||||  ||||||||||   |||| |||| | ||| |||| ||||| ||| ||||  ||||||     
T  13377336 cataaagttccaagtacctcagatgaattatattcttcaatcctgagagttgaaaagaacttgtacgtaaagctcggagaggagtgattgatggaaacaa 13377435  T
Q  126 atctaaattcttggagggtggtttatactcaagaaaggttcgcaaggaatcaactttttggaagg 190  Q
    ||||||| | ||| ||||||||||  |||||||||||||||||||||| |||||||||| |||||    
T  13377436 atctaaaattttgcagggtggtttgaactcaagaaaggttcgcaaggattcaactttttcgaagg 13377500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 413
Target Start/End: Original strand, 13377598 - 13377705
Alignment:
Q  306 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 405  Q
    |||||||| |||||| || || ||||||||||||||||  ||||||||||||  ||||||  |||||||| | | ||| |||||||||||||||||||||    
T  13377598 acattcttctcccattatggattgagctaaatcatggactaaatcatgcattttgaatgttatgttacctaccacatctgatttaacttcttgaaaaaat 13377697  T
Q  406 gatctttg 413  Q
    ||||||||    
T  13377698 gatctttg 13377705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 413
Target Start/End: Original strand, 8595 - 8764
Alignment:
Q  244 aagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatgga 343  Q
    |||| ||||| ||||||| ||| | |||||| |||||||||  |||||   ||| |||  | ||| |||| |||||||| ||| ||||||||||||||||    
T  8595 aagaaacttatatggtgagctctagttgacagattagtcaagcctgaagactcagaagccacacactcttctcccataacagattgagctaaatcatgga 8694  T
Q  344 taaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttg 413  Q
      ||||||||||||  ||| ||| |||||||| | ||||| ||||| ||||||||||| ||||| |||||    
T  8695 ctaaatcatgcattttgaaagtaatgttacctacaaaatcggatttgacttcttgaaagaatgacctttg 8764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 8857 - 8919
Alignment:
Q  304 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 366  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  8857 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 8919  T

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Target: scaffold0230 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 4176 - 4238
Alignment:
Q  304 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 366  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  4176 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 4238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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