View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6790_high_1 (Length: 673)

Name: NF6790_high_1
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6790_high_1
NF6790_high_1
[»] chr4 (1 HSPs)
chr4 (20-658)||(53615125-53615763)


Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 20 - 658
Target Start/End: Original strand, 53615125 - 53615763
Alignment:
Q  20 caaatgtatcaaaatttaatcgttaccaatcaaaaagtcttacaattgaactcgtgattagtttgaaacaaatttttaaccttattcagtgcacttaatc 119  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  53615125 caaatttatcaaaatttaatcgttaccaatcaaaaagtcttacaattgaacttgtgattaggttgaaacaaattttttaccttattcagtgcacttaatc 53615224  T
Q  120 caaaatcagacacttttagatttcccttgctgtctaggagcaagttttctggctgtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615225 caaaatcagacacttttagatttcccttgctgtctaggagcaagttttctggctgtattgacacatgtaaaaggtgtaaggtttcaaaacttgtttttct 53615324  T
Q  220 aaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaactcccttgttatggcagtagtcgacggcgtcaataagttgttggaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615325 aaacaaagaaaaatgcaggattggtttaacttaccttgagatcgcggtgataaactcccttgttatggcagtagtcgacggcgtcaataagttgttggaa 53615424  T
Q  320 tagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaaaattttcagaattgaagtattataattgtaagtacacaacatttga 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615425 tagttttcttgcctcacattcattcaacttgttgcaataggactgcataaacaaaattttcagaattgaagtattataattgtaagtacacaacatttga 53615524  T
Q  420 acaacaaagagattgttgatatgattctcactattttgtccaatagttgacctcctgatacatattccatcacaatgtatatttttgtttttgtgccaat 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615525 acaacaaagagattgttgatatgattctcactattttgtccaatagttgacctcctgatacatattccatcacaatgtatatttttgtttttgtgccaat 53615624  T
Q  520 aacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagggattgtgaatcttcaagactcacaagaattccaacaccagcaggta 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615625 aacctgttttatgatgaaattcattcaaaaattaatactagtgagtgagaaagggattgtgaatcttcaagactcacaagaattccaacaccagcaggta 53615724  T
Q  620 taatatacctcatgaattctaactatatttggatgatgt 658  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53615725 taatatacctcatgaattctaactatatttggatgatgt 53615763  T

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