View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_high_10 (Length: 339)
Name: NF6790_high_10
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 29075204 - 29075495
Alignment:
| Q |
11 |
gacatcaatccaatagatgttataattaagtcttaaaatgcataacaagaagagtccaaaacaaagaagggcccaaaacaaatgcatgcataattaattt |
110 |
Q |
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| T |
29075204 |
gacattaatccaatagatgttataattaagtctaaaaatgcataacaagaagagtccaa-----------------aacaaatgcatgcataattaattt |
29075286 |
T |
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| Q |
111 |
cttagttattctttccaaagtgcattcatccatggaattttagtgggtgcacacggttaacatgtcaaattaccactcccttggataatcaatgattagt |
210 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29075287 |
cttagtcattctttccaaagtgcattcatccatggaattttagtgggtgcacacggttaacatgtcaaattaccactcccttggataatcaatgattagt |
29075386 |
T |
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| Q |
211 |
atgattatgtccaaaatcaattgcatattgcatggttgatagtacattttccaattatttcaaggtagctgccatttgctttcaaatcttgaataatttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29075387 |
atgattatgtccaaaatcaattgcatattgcatggttgatagtacattttccaattatttcaaggtagctgccatttgctttcaaatcttgaataatttc |
29075486 |
T |
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