View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_high_3 (Length: 638)
Name: NF6790_high_3
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 164 - 513
Target Start/End: Complemental strand, 8901176 - 8900829
Alignment:
| Q |
164 |
tttagtttatggctccc-acgtgtaagtctcctcaccacaagatgaaaagcaaacaattccaatcaagatttaattttggatttgatgacgacgaccccc |
262 |
Q |
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| T |
8901176 |
tttagtttatgactccccacgtgtaagtctcctcaccacaagatgaaaagcaaacaattccaatcaagatttaattttggatttgatgacgacgaccc-- |
8901079 |
T |
|
| Q |
263 |
attcacaacatatctgcctcaagtcctcaacataaaaacacagatcgacacgtgtcctatcaatggaccccacaagataacttctcaaacactacattnn |
362 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8901078 |
attcacaaaatatctgcctcaagtcctcaacataaaaacacagatcgacacgtgtcctatcaatggaccccacaagataacttctcaaacactacatt-a |
8900980 |
T |
|
| Q |
363 |
nnnnnngcaatggctcatattgttccacgtcacccaccagtaacaaccctctttttgatttgatgaacaaagaaagattcttctataaagaagatatttt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8900979 |
aaaaaagcaatggctcatattgttccacgtcacccaccagtaacaaccctctttttgatttgatgaacaaagaaagattcttctataaagaagatatttt |
8900880 |
T |
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| Q |
463 |
cagcatttttcgcggttttgaaaaatctttatccacctaagaatgaggtca |
513 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8900879 |
cagcgtttttcgcggttttgaaaaatctttatccacctaagaatgaggtca |
8900829 |
T |
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