View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_high_4 (Length: 547)
Name: NF6790_high_4
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 20 - 547
Target Start/End: Complemental strand, 3922761 - 3922234
Alignment:
| Q |
20 |
aagcgaggcggaaccagcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaatagcaaactataac |
119 |
Q |
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| T |
3922761 |
aagcgaggcggaaccggcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaatagcaaactataac |
3922662 |
T |
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| Q |
120 |
aggatcatgagtcttattagttacnnnnnnnnnnnnnggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtgctttttcatattt |
219 |
Q |
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| T |
3922661 |
aggatcatgagtcttattagttacttttttgctttttggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtgctttttcatattt |
3922562 |
T |
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| Q |
220 |
tttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataatttcaagaagcatga |
319 |
Q |
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| T |
3922561 |
tttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataatttcaagaagcatga |
3922462 |
T |
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| Q |
320 |
gcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgatttctttccaactcaaattggaggt |
419 |
Q |
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| T |
3922461 |
gcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgttttctttccaactcaaattggaggt |
3922362 |
T |
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| Q |
420 |
gaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctc |
519 |
Q |
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| T |
3922361 |
gaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaaagctacaatctc |
3922262 |
T |
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| Q |
520 |
tgatcagttggagggatccaagagctac |
547 |
Q |
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| T |
3922261 |
tgatcagttggagggatccaagagctac |
3922234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 197 - 539
Target Start/End: Original strand, 34958057 - 34958404
Alignment:
| Q |
197 |
tgaagcagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
296 |
Q |
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| T |
34958057 |
tgaaacagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
34958156 |
T |
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| Q |
297 |
aattataatttcaagaagcatgagcatccttgtcacatagatgcaacatta-----tctggtgctgatacaacaaattatgatgatttagaagaagaact |
391 |
Q |
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| T |
34958157 |
aattataatttcaaaaagcatgagcatccttgtcacatagatgcaacattatattatctggtgctgatacaacaaattctgatgatttagaagaagaact |
34958256 |
T |
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| Q |
392 |
tgatttctttccaactcaaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattg |
491 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
34958257 |
tgatttctttccaactcaaactggaggtgaagatttgagaaggaggtatgataggttgagagtcattggcaggaatgcacaaaaaagggttgatcaatta |
34958356 |
T |
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| Q |
492 |
gccaccattttagaaaagctacaatctctgatcagttggagggatcca |
539 |
Q |
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| T |
34958357 |
gctaccattttagaaaagctacaatttctgatcagttggagggatcca |
34958404 |
T |
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