View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6790_high_5 (Length: 490)
Name: NF6790_high_5
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Original strand, 33715947 - 33716416
Alignment:
| Q |
20 |
agttcctctaacaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttg |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
33715947 |
agttcctctaacaggttcaacatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctaactcaggaaatttg |
33716046 |
T |
|
| Q |
120 |
acatctctgctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33716047 |
acatctctgctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaagttttaggttctgctttct |
33716146 |
T |
|
| Q |
220 |
tcttgatttgttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttccca |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716147 |
tcttgatttgttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttccca |
33716246 |
T |
|
| Q |
320 |
tatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716247 |
tatggcatcaacttgtgcttttacttctgtaacatcctattttgattccaggctttcccctggaacaggttctttgacagattttgcagagtttccattg |
33716346 |
T |
|
| Q |
419 |
attgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaa |
488 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33716347 |
attgtatcgacggaactcatcactcccgcaacgttcacaatagatggatggtggaggaacgcaacaccaa |
33716416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 22 - 488
Target Start/End: Original strand, 28697452 - 28697919
Alignment:
| Q |
22 |
ttcctctaacaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttgac |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||| |
|
|
| T |
28697452 |
ttcctctaacaggttcatcatcaacatcttcattctcctcctgaaatttaaacttctcacaatcttcccaattccaacaatctgactcaagaaatttgac |
28697551 |
T |
|
| Q |
122 |
atctctgctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttcttc |
221 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
28697552 |
atctctgctaacaattattttattgctttgtggaagatagattctatagacttttgaagatgagttatagcctacaaaaatttcaggttctgttttcttc |
28697651 |
T |
|
| Q |
222 |
ttgatttgttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccata |
321 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28697652 |
ttgatttgttcaaggacaacatccacaacagaagatttaggcttgcttttaaaactgttaagaacgttattggacactcctttgttcatttgttcccata |
28697751 |
T |
|
| Q |
322 |
tggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttccattgat |
420 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28697752 |
tggcatcaacttgtgcttttacttcagtaacatcctgttttagttccaggatttcccctgaaacaggttctttgacagattttgcagagtttccattgat |
28697851 |
T |
|
| Q |
421 |
tgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaa |
488 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28697852 |
tgtatcgacggaactcatcactcccgcaacgttcacgatagatggatggtggaggaacgcaacaccaa |
28697919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 628154 - 627670
Alignment:
| Q |
20 |
agttcctctaacaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttg |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||| |
|
|
| T |
628154 |
agttcctctaacaggttcaccatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaaatatttgactcaagaaatttg |
628055 |
T |
|
| Q |
120 |
acatctctgctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
628054 |
acatctctgctaacaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctatagcctacaaaaatttcaggttctgttttct |
627955 |
T |
|
| Q |
220 |
tcttgatttgttcaaggacaacatcgacaacagaagatt---------------taggcttgcttttaaaactgctaataacgttattggacactccttt |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
627954 |
tcttgatttgttcaaggacaacatccacatcagaagattttgatcttgattctataggcttgcttttaaaactgttaataacgttattggacactccttt |
627855 |
T |
|
| Q |
305 |
attcatttgttcccatatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagatttt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
627854 |
attcatttgttcccatatggcatcaacttgtgcttttacttcagtaacatcctgttttagtttcaggatttcccctgaaacaggttctttgacagatttt |
627755 |
T |
|
| Q |
404 |
gcagagtttccattgattgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggaggaacgcaacaccaa |
488 |
Q |
| |
|
| ||||||||||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
627754 |
gtagagtttccattgattgtatccatggaactcatcactcccgcagcgttcacgatagatggatggtggaagaatgcaacaccaa |
627670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 27711909 - 27711514
Alignment:
| Q |
20 |
agttcctctaacaggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattttaactatctgactcaggaaatttg |
119 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
27711909 |
agttcctttaataggttcatcatcaacatcttcattctcctcctgaaattcaaacttctcacaatcttcccaattccaactatctgactcaagaaatttg |
27711810 |
T |
|
| Q |
120 |
acatctctgctaacaattactttgttgctttttggaagatagattttatagacttttgaagatgagctatagcctacaaaaattttaggttctgctttct |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
27711809 |
acatctatgctaacaattactttgttgctttgtggaagatagattctatagacttttgaagatgagctataacctacaaaaatttcaggttctgttttct |
27711710 |
T |
|
| Q |
220 |
tcttgatttgttcaaggacaacatcgacaacagaagatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttccca |
319 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27711709 |
tcttgatttgtacaaggacaacatccacagcagaagatttaggcttgcttttaaaactgttaataacgttattggacaggcctttattcatttgttccca |
27711610 |
T |
|
| Q |
320 |
tatggcatcaacttgtgcttttacttctgtaacatcctattttggttccaggcttt-ccctggaacaggttctttgacagattttgcagagtttcc |
414 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27711609 |
tatggcatcaacttgtgcttttacttcagtaacatcctgttttggttccaggatttcccctggaacatgttctttgacagattttgcagagtttcc |
27711514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 50793988 - 50793895
Alignment:
| Q |
254 |
agatttaggcttgcttttaaaactgctaataacgttattggacactcctttattcatttgttcccatatggcatcaacttgtgcttttacttct |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50793988 |
agatttaggcttgcttttaaaactgctaataactttattggacacacctttattcatttgttcccatatggcatcaacttcagcttttacttct |
50793895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 50793815 - 50793736
Alignment:
| Q |
348 |
gtaacatcctattttggttccaggctt-tccctggaacaggttctttgacagattttgcagagtttccattgattgtatc |
426 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50793815 |
gtaacatcctgttttggttccaggcttgtccctggaacaggttctttgacagattttgcagaatttccattgattgtatc |
50793736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 50795050 - 50795007
Alignment:
| Q |
212 |
tgctttcttcttgatttgttcaaggacaacatcgacaacagaag |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
50795050 |
tgctttcttcttgatttgttcaaggacagcatccacagcagaag |
50795007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University