View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_high_6 (Length: 427)
Name: NF6790_high_6
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 15 - 405
Target Start/End: Complemental strand, 4795759 - 4795352
Alignment:
| Q |
15 |
atcattaatttctttggttgtaacagcattaatggtaactttattttttcaacctcatcaacatatctcagcagcatcacagaataatggatgccttgga |
114 |
Q |
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| T |
4795759 |
atcattaatttctttggttgtaacagcattaatggtaactttattttttcaacctcatcaacatagctcagcagcatcacagaataatggatgccttgga |
4795660 |
T |
|
| Q |
115 |
cttcactgcctaacagccgtcgatgacgaaaccaacttcatggatcaactggtcgcaggcggcgacacgtcattcctttcacaatcaaccatgagtcgcg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4795659 |
cttcactgcctaacagccgtcgatgacgaaaccaacttcatggatcaactggtcgcaggcggcgacacgtcattcctttcacaattaaccatgagtcgcg |
4795560 |
T |
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| Q |
215 |
g-----------------ccgagcatcgttctagtacttcatgcattcctcctgggtctcatcaggtcagatcgactccctgtgaaccaataaacagagt |
297 |
Q |
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| T |
4795559 |
gcaacccagcatgtaggcccgggcctggttctcatatttcatgcactcctcctgggtctcctcagttcggatcgattcactgtgaaccaattaacagagt |
4795460 |
T |
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| Q |
298 |
aagtaatccaccatatgcatgcagacgattgacaaattcatagtcagatgtatttaatgatttgaatattcttattttgtactctatgaattaaattagt |
397 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4795459 |
aagtaatccaacatatgcatgcagacgaatgacaaattcatagtcagatgtatttaatgatttgaatgttcttattttgtactctatgaattaaattagt |
4795360 |
T |
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| Q |
398 |
gtgtatta |
405 |
Q |
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|||||||| |
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| T |
4795359 |
gtgtatta |
4795352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 4679830 - 4679793
Alignment:
| Q |
61 |
tttcaacctcatcaacatatctcagcagcatcacagaa |
98 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| |
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| T |
4679830 |
tttcaaccacatcaacatatctcagcagcaccacagaa |
4679793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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