View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_low_14 (Length: 342)
Name: NF6790_low_14
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 23630685 - 23630384
Alignment:
| Q |
22 |
atcaccttccattagcatagacaaaagatcttcatcgctgaaaccatttaatcctaacaaagctgaattcatttttaggctttcaaaagtaatgacacct |
121 |
Q |
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| T |
23630685 |
atcaccttccattagcatagacaaaagatcttcatcgctgaaaccatttaaccctagcaaagctgaattcatttttaggctttcaaaagtaatgacacct |
23630586 |
T |
|
| Q |
122 |
ttattagaatccttcaaaagattgaacccattacatagttcatctatcaagccatctccacctaacttgttggccatgaaaggaaggtgatcatagaaat |
221 |
Q |
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| T |
23630585 |
ttattagaatccttcaaaagattgaacccgttacatagttcatctatcaagccatctccacctaacttgtttgccatgaaaggaaggtgatcatagaaat |
23630486 |
T |
|
| Q |
222 |
gagactgtggtgggttttgtgatgccattgtgattaaag--atatttaagagtgagatggaatataaatggtgatgaaggaaatagggtatatatagtaa |
319 |
Q |
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| T |
23630485 |
gagactgtggtgggttttgtgatgccattgtgattaaagatatatttaagagtgagatggaatataaatggtgaagaaggaaatagggtatatatagtaa |
23630386 |
T |
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| Q |
320 |
ga |
321 |
Q |
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|| |
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| T |
23630385 |
ga |
23630384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 34232644 - 34232525
Alignment:
| Q |
79 |
caaagctgaattcatttttaggctttcaaaagtaatgacacctttattagaatccttcaaaagattgaacccattacatagttcatctatcaagccatct |
178 |
Q |
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||||||||||||| | || ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||| ||||||||| || ||||| |
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| T |
34232644 |
caaagctgaattcttcttaaggctttcaaaagtaatgacacctttagtagaatccatcaaaagattgaaaccattgcataattcatctattaatccatca |
34232545 |
T |
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| Q |
179 |
ccacctaacttgttggccat |
198 |
Q |
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||||| | |||||| ||||| |
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| T |
34232544 |
ccaccaagcttgtttgccat |
34232525 |
T |
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