View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6790_low_16 (Length: 328)

Name: NF6790_low_16
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6790_low_16
NF6790_low_16
[»] chr5 (22 HSPs)
chr5 (21-319)||(18606882-18607180)
chr5 (250-289)||(16434396-16434435)
chr5 (238-289)||(37472599-37472650)
chr5 (249-296)||(41600897-41600944)
chr5 (229-290)||(18288044-18288105)
chr5 (238-287)||(31264446-31264495)
chr5 (233-289)||(5467975-5468031)
chr5 (249-289)||(40211962-40212002)
chr5 (250-289)||(11596469-11596508)
chr5 (242-289)||(19737488-19737535)
chr5 (233-288)||(43554528-43554583)
chr5 (238-300)||(7997168-7997230)
chr5 (253-287)||(22423829-22423863)
chr5 (239-281)||(26205763-26205805)
chr5 (81-122)||(18586123-18586164)
chr5 (233-294)||(25863205-25863266)
chr5 (244-289)||(28296334-28296379)
chr5 (242-287)||(28588680-28588725)
chr5 (242-287)||(30098334-30098379)
chr5 (233-286)||(39695996-39696049)
chr5 (245-289)||(21577117-21577161)
chr5 (249-289)||(43208287-43208327)
[»] chr3 (21 HSPs)
chr3 (218-294)||(52369776-52369852)
chr3 (233-296)||(12704654-12704717)
chr3 (236-288)||(3730165-3730217)
chr3 (242-300)||(13807164-13807222)
chr3 (230-300)||(25652025-25652095)
chr3 (233-294)||(7931595-7931656)
chr3 (249-281)||(12987752-12987784)
chr3 (232-296)||(21211287-21211351)
chr3 (242-289)||(20691325-20691372)
chr3 (238-293)||(25365464-25365519)
chr3 (233-288)||(25892467-25892522)
chr3 (242-289)||(40150577-40150624)
chr3 (241-287)||(1830351-1830397)
chr3 (238-300)||(15864828-15864890)
chr3 (238-300)||(24205043-24205105)
chr3 (242-292)||(33006826-33006876)
chr3 (239-289)||(34189433-34189483)
chr3 (243-289)||(37077364-37077410)
chr3 (241-289)||(21149073-21149121)
chr3 (233-289)||(25074795-25074851)
chr3 (233-285)||(51512180-51512232)
[»] chr6 (24 HSPs)
chr6 (240-308)||(6299499-6299567)
chr6 (240-308)||(6306309-6306377)
chr6 (233-290)||(34446570-34446627)
chr6 (232-300)||(6389738-6389806)
chr6 (238-290)||(12086347-12086399)
chr6 (238-290)||(12235521-12235573)
chr6 (238-289)||(13689195-13689246)
chr6 (253-288)||(15443702-15443737)
chr6 (250-294)||(13211295-13211339)
chr6 (256-288)||(33141265-33141297)
chr6 (233-300)||(17168460-17168527)
chr6 (243-285)||(9024183-9024225)
chr6 (250-288)||(29049892-29049930)
chr6 (254-296)||(29711261-29711303)
chr6 (233-287)||(30781291-30781345)
chr6 (244-289)||(7569176-7569221)
chr6 (242-283)||(8931608-8931649)
chr6 (242-287)||(9617442-9617487)
chr6 (233-290)||(26247431-26247488)
chr6 (242-287)||(30866150-30866195)
chr6 (201-294)||(34229455-34229548)
chr6 (258-294)||(2140503-2140539)
chr6 (242-286)||(9629392-9629436)
chr6 (233-289)||(19602178-19602234)
[»] chr4 (24 HSPs)
chr4 (239-294)||(19230312-19230367)
chr4 (218-288)||(31243530-31243600)
chr4 (233-300)||(20743275-20743342)
chr4 (233-300)||(24343502-24343569)
chr4 (238-300)||(12084215-12084277)
chr4 (242-289)||(14465300-14465347)
chr4 (243-289)||(18513248-18513294)
chr4 (244-289)||(5654599-5654644)
chr4 (249-290)||(43299984-43300025)
chr4 (249-290)||(43300621-43300662)
chr4 (253-297)||(5176982-5177026)
chr4 (249-289)||(10546154-10546194)
chr4 (233-296)||(8820407-8820470)
chr4 (253-288)||(23915136-23915171)
chr4 (242-288)||(25390892-25390938)
chr4 (244-286)||(46180944-46180986)
chr4 (233-290)||(3144649-3144706)
chr4 (243-288)||(6285061-6285106)
chr4 (242-287)||(33950144-33950189)
chr4 (233-289)||(34589705-34589759)
chr4 (253-286)||(44796979-44797012)
chr4 (250-294)||(2976695-2976739)
chr4 (242-286)||(11110212-11110256)
chr4 (238-290)||(16402213-16402265)
[»] chr1 (21 HSPs)
chr1 (233-296)||(6936397-6936460)
chr1 (239-290)||(11634127-11634178)
chr1 (243-290)||(40747780-40747827)
chr1 (255-289)||(48785283-48785317)
chr1 (233-290)||(42004944-42005001)
chr1 (232-288)||(39101178-39101234)
chr1 (242-285)||(2445880-2445923)
chr1 (242-289)||(11412774-11412821)
chr1 (252-295)||(11571585-11571628)
chr1 (242-289)||(24176373-24176420)
chr1 (249-287)||(609471-609509)
chr1 (253-287)||(1262892-1262926)
chr1 (250-288)||(3921674-3921712)
chr1 (238-296)||(22794080-22794138)
chr1 (251-289)||(43609833-43609871)
chr1 (251-288)||(17080896-17080933)
chr1 (259-296)||(24806944-24806981)
chr1 (242-287)||(36878469-36878514)
chr1 (251-288)||(43942331-43942368)
chr1 (244-300)||(6427345-6427401)
chr1 (243-287)||(30847727-30847771)
[»] chr8 (22 HSPs)
chr8 (244-289)||(3508058-3508103)
chr8 (243-287)||(8798838-8798882)
chr8 (249-288)||(37225756-37225795)
chr8 (233-288)||(40063958-40064013)
chr8 (245-290)||(30068037-30068082)
chr8 (218-290)||(13009475-13009547)
chr8 (220-288)||(13845241-13845309)
chr8 (242-294)||(33697147-33697199)
chr8 (238-290)||(35431142-35431194)
chr8 (239-290)||(3658152-3658203)
chr8 (239-294)||(9936815-9936870)
chr8 (249-288)||(12985399-12985438)
chr8 (237-288)||(28883879-28883930)
chr8 (233-300)||(44067511-44067578)
chr8 (258-288)||(14227229-14227259)
chr8 (249-287)||(29198492-29198530)
chr8 (238-288)||(39820436-39820486)
chr8 (244-289)||(22770968-22771013)
chr8 (242-287)||(31236583-31236628)
chr8 (238-290)||(1676717-1676769)
chr8 (243-287)||(3025559-3025603)
chr8 (249-289)||(26466561-26466601)
[»] chr7 (18 HSPs)
chr7 (233-290)||(5938477-5938534)
chr7 (233-294)||(17780081-17780142)
chr7 (242-289)||(2525850-2525897)
chr7 (242-289)||(38134412-38134459)
chr7 (233-290)||(23930224-23930281)
chr7 (233-288)||(29812661-29812716)
chr7 (233-300)||(43249988-43250055)
chr7 (238-288)||(3801207-3801257)
chr7 (242-308)||(19206037-19206103)
chr7 (251-289)||(35238199-35238237)
chr7 (251-289)||(44172905-44172943)
chr7 (243-288)||(4909158-4909203)
chr7 (242-287)||(24146824-24146869)
chr7 (239-300)||(38804558-38804619)
chr7 (245-285)||(7133287-7133327)
chr7 (238-290)||(23751905-23751957)
chr7 (244-288)||(36314635-36314679)
chr7 (242-286)||(41229304-41229348)
[»] chr2 (20 HSPs)
chr2 (239-303)||(10535762-10535826)
chr2 (238-294)||(12748685-12748741)
chr2 (233-300)||(24011031-24011098)
chr2 (233-288)||(25544488-25544543)
chr2 (258-296)||(2073941-2073979)
chr2 (243-289)||(18570978-18571024)
chr2 (233-290)||(30563414-30563471)
chr2 (249-289)||(4690296-4690336)
chr2 (233-285)||(11308001-11308053)
chr2 (233-289)||(19573984-19574040)
chr2 (244-288)||(19613621-19613665)
chr2 (233-289)||(23354649-23354705)
chr2 (251-294)||(10250727-10250770)
chr2 (242-289)||(34006997-34007044)
chr2 (253-288)||(44605156-44605191)
chr2 (243-289)||(23406874-23406920)
chr2 (243-311)||(30394441-30394509)
chr2 (249-289)||(31026701-31026741)
chr2 (253-288)||(36611906-36611942)
chr2 (253-289)||(40681988-40682024)
[»] scaffold0011 (1 HSPs)
scaffold0011 (242-288)||(240027-240073)
[»] scaffold0598 (1 HSPs)
scaffold0598 (238-290)||(8055-8107)
[»] scaffold0007 (1 HSPs)
scaffold0007 (239-289)||(225271-225321)
[»] scaffold0022 (1 HSPs)
scaffold0022 (244-289)||(99899-99944)
[»] scaffold0199 (1 HSPs)
scaffold0199 (238-290)||(1954-2006)
[»] scaffold0037 (1 HSPs)
scaffold0037 (253-297)||(102903-102947)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 18606882 - 18607180
Alignment:
Q  21 catatcaaagtggtgactacgtaatatgttttgtggataaaactgaagatccccaaatagcactctctattgattttgagtggagaactggtatggcagc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||||||||    
T  18606882 catatcaaagtggtgactacgtaatatgttttgtggataaaactgaagatccccacgtatcactctctattgattttgagtggaaaactggtatggcagc 18606981  T
Q  121 cattgatcggcacggtattgcaaagaaatacaacgttgatgtaagtttctcaatttattactataaaatacagacactcctcggattagaggtgttccgg 220  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  18606982 cattgatcggcacagtattgcaaagaaaaccaacgttgatgtaagtttctcaatttattactgtaaaatacagacactcctcggactagaggtgttccgg 18607081  T
Q  221 tgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgtatgatgtccat 319  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||    
T  18607082 tgtcggacaccaacacagacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgtatcggtgtctgatgtccat 18607180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 16434396 - 16434435
Alignment:
Q  250 atgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  16434396 atgattatattgaattatgttattttttcaaattattatc 16434435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 37472599 - 37472650
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||||| ||||||||||| ||||||||| |||||||| ||||||||||    
T  37472599 gacacgacacatatgattatatcgaattatgtcattttctcgaattattatc 37472650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 41600944 - 41600897
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatccatgttg 296  Q
    ||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  41600944 tatgattatattgaattgtgtaattttctcaaattattatcaatgttg 41600897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 18288044 - 18288105
Alignment:
Q  229 accaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||||||  |||| |||||||||||||||| ||| ||| || ||||||||||||||||||||    
T  18288044 accaacattgacatgacacctatgattatactgagttaagtcattttctcaaattattatcc 18288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||||||| |||||||| | |||||||||| |||||||||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 5467975 - 5468031
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| |||||||||||||| |||| | |||||||||| ||||| |||||||||||||    
T  5467975 acaccgacacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 40212002 - 40211962
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  40212002 tatgattatattgaattatgtaattttctcaatttattatc 40211962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 11596469 - 11596508
Alignment:
Q  250 atgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  11596469 atgattacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 19737488 - 19737535
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| |||||||  |||||||||||| |||||||||||||||||||    
T  19737488 cgacacatatgattgcattgaattatgtaattttctcaaattattatc 19737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 43554583 - 43554528
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||||||||||||||    
T  43554583 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 7997168 - 7997230
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||||||||| ||| |||| | || ||||| | |||||||||||||||||||| |||||||||    
T  7997168 gacacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgt 7997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 22423829 - 22423863
Alignment:
Q  253 attatattgaattatgttattttctcaaattatta 287  Q
    ||||||||||||||||| |||||||||||||||||    
T  22423829 attatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 26205763 - 26205805
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaa 281  Q
    |||||||||||||||||| | |||||||||| |||||||||||    
T  26205763 acacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 18586123 - 18586164
Alignment:
Q  81 cactctctattgattttgagtggagaactggtatggcagcca 122  Q
    |||||||||||||||||| ||||| ||||||| |||||||||    
T  18586123 cactctctattgattttgtgtggaaaactggtgtggcagcca 18586164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 25863266 - 25863205
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    |||| |||||||||| ||| |||| | |||||||| | |||||||||||||||||| |||||    
T  25863266 acactgacacgacacttataattacactgaattatatcattttctcaaattattatacatgt 25863205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 28296379 - 28296334
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||    
T  28296379 acacatatgagtacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 28588680 - 28588725
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||||||| |||| | |||||||||| |||||||||||||||||    
T  28588680 cgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 30098379 - 30098334
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    ||||| |||| |||| |||||||||||| |||||||||||||||||    
T  30098379 cgacatctataattacattgaattatgtgattttctcaaattatta 30098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 39695996 - 39696049
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattatt 286  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||||||||||||    
T  39695996 acaccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 21577117 - 21577161
Alignment:
Q  245 cacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||| |||| | | ||||||||||||||||||||||||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattattatc 21577161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 43208287 - 43208327
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  43208287 tatgattacattgaattatgtcattttctcaaattactatc 43208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 52369852 - 52369776
Alignment:
Q  218 cggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    ||||||| || ||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  52369852 cggtgtccgataccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgt 52369776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 12704654 - 12704717
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 296  Q
    |||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||| |||||    
T  12704654 acaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 3730165 - 3730217
Alignment:
Q  236 cagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||||||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  3730165 cagacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 13807222 - 13807164
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||||| ||| ||||||||||||||||| ||||||||||||| |||||  |||||||||    
T  13807222 cgacacatattattatattgaattatgtgattttctcaaattgttatcagtgttggcgt 13807164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 25652025 - 25652095
Alignment:
Q  230 ccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    ||||||| ||||| |||||||| | || | |||||||| | |||||||||||||||||||| |||||||||    
T  25652025 ccaacactgacacaacacctataactacactgaattatatcattttctcaaattattatccgtgttggcgt 25652095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 7931595 - 7931656
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    ||||||||||||||||||| |||| | ||||||| |||||| |||||||||| |||| ||||    
T  7931595 acacagacacgacacctataattacactgaattacgttattctctcaaattactatctatgt 7931656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 12987784 - 12987752
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaa 281  Q
    |||||||||||||||||||||||||||||||||    
T  12987784 tatgattatattgaattatgttattttctcaaa 12987752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 21211351 - 21211287
Alignment:
Q  232 aacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 296  Q
    ||||| ||||||||||| || |||| | |||| ||||| |||||||||||||||||||| |||||    
T  21211351 aacaccgacacgacacccataattacactgaactatgtaattttctcaaattattatccgtgttg 21211287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 20691372 - 20691325
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| |||||||| | |||||||||| |||||||||||||||||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 25365519 - 25365464
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatg 293  Q
    |||||||||| |||||||| |  ||||||||| || ||||||||||||||||||||    
T  25365519 gacacgacacttatgattacaccgaattatgtcatattctcaaattattatccatg 25365464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 25892522 - 25892467
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||| ||||||||||||||||||| | |||||||| | ||||||| ||||||||||    
T  25892522 acactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 40150577 - 40150624
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| |||||||| |||||||||| | |||||||||||||||||||    
T  40150577 cgacacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  241 acgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||||||||||||| | |||||||||| ||||||| |||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 15864890 - 15864828
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    ||||||||||||||||||| | | |||||| | ||||| |||||||||||||| ||| |||||    
T  15864890 gacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgt 15864828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 24205043 - 24205105
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||||||||| ||| |||| | || ||||||| |||||||||||||||||||| ||| |||||    
T  24205043 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgt 24205105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 33006876 - 33006826
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatccat 292  Q
    ||||||||| ||||| | |||||||||| ||||| ||||||||||||||||    
T  33006876 cgacacctacgattaaactgaattatgtaattttatcaaattattatccat 33006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 34189483 - 34189433
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||||||| ||||| | |||| ||||| |||||||||||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatc 34189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 37077410 - 37077364
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||| |||||||  ||||||||||||||| ||||||||||||||||    
T  37077410 gacacatatgattccattgaattatgttatattctcaaattattatc 37077364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 21149121 - 21149073
Alignment:
Q  241 acgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| || |||||| | |||||||||| |||||||||||||||||||    
T  21149121 acgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 25074851 - 25074795
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| ||||| || |||||||||| | | |||||||| |||||||||||||||||||    
T  25074851 acaccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 51512180 - 51512232
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattat 285  Q
    |||| |||||||||| |||||||  |||||||||||| ||||| |||||||||    
T  51512180 acaccgacacgacacatatgattccattgaattatgtgattttatcaaattat 51512232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 6299567 - 6299499
Alignment:
Q  240 cacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgt 308  Q
    |||||||||||| |||| |||||||||| | |||||||||||||||||||||||| ||||| |||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgt 6299499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 6306377 - 6306309
Alignment:
Q  240 cacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgt 308  Q
    |||||||||||| |||| |||||||||| | |||||||||||||||||||||||| ||||| |||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgt 6306309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 34446627 - 34446570
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  34446627 acaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 6389806 - 6389738
Alignment:
Q  232 aacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    ||||| ||||||||||||||||||| | | |||||| | |||||||||||||||||||| ||| |||||    
T  6389806 aacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgt 6389738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 12086347 - 12086399
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||||||||||||| | |||||||||| ||| ||||||||||||||||    
T  12086347 gacacgacacctatgattaaactgaattatgtcattatctcaaattattatcc 12086399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 12235521 - 12235573
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||||||||||||| | |||||||||| |||||||| |||||||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 13689195 - 13689246
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||| ||||||||||| |||||| | |||||||||||||||||||||||    
T  13689195 gacacgatacctatgattacattgaaatttgttattttctcaaattattatc 13689246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 15443737 - 15443702
Alignment:
Q  253 attatattgaattatgttattttctcaaattattat 288  Q
    ||||||||||||||||||||||||||||||||||||    
T  15443737 attatattgaattatgttattttctcaaattattat 15443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 13211295 - 13211339
Alignment:
Q  250 atgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||    
T  13211295 atgattatattaaattatgtcattttctcaaattattatcaatgt 13211339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 33141297 - 33141265
Alignment:
Q  256 atattgaattatgttattttctcaaattattat 288  Q
    |||||||||||||||||||||||||||||||||    
T  33141297 atattgaattatgttattttctcaaattattat 33141265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 17168460 - 17168527
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||| |||||||||||||| |||| | | |||||| | |||||||||||||||||||  |||||||||    
T  17168460 acaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgt 17168527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 9024183 - 9024225
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattat 285  Q
    ||||| |||||||| |||||||||||| |||||||||||||||    
T  9024183 gacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 29049930 - 29049892
Alignment:
Q  250 atgattatattgaattatgttattttctcaaattattat 288  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  29049930 atgattacattgaattatgtaattttctcaaattattat 29049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 29711303 - 29711261
Alignment:
Q  254 ttatattgaattatgttattttctcaaattattatccatgttg 296  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||    
T  29711303 ttataatgaattatgtcattttctcaaattattatcgatgttg 29711261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 30781291 - 30781345
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||| |||| |||||||||||||| | | |||||||| |||||||||||||||||    
T  30781291 acaccgacatgacacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 7569176 - 7569221
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||| |||| | |||||||||| |||||||||||||||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattatc 7569221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 8931608 - 8931649
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaatt 283  Q
    |||||| ||| |||||| ||||||||||||||||||||||||    
T  8931608 cgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 9617487 - 9617442
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||    
T  9617487 cgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 26247488 - 26247431
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||| ||||||| ||||||||||||| | || ||||| ||||||| ||||||||||||    
T  26247488 acaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatcc 26247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 30866150 - 30866195
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||    
T  30866150 cgacacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 34229548 - 34229455
Alignment:
Q  201 tcggattagaggtgttccggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    |||||||||| |||| |||||||| || ||| ||||  ||||| || |||| |||| | ||| || ||| ||||| ||||||||||||||||||    
T  34229548 tcggattagatgtgtcccggtgtccgacaccgacaccaacacggcatctattattacactgacttgtgtcattttttcaaattattatccatgt 34229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 2140503 - 2140539
Alignment:
Q  258 attgaattatgttattttctcaaattattatccatgt 294  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  2140503 attgaattatgtcattttctcaaattattatcaatgt 2140539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 9629436 - 9629392
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatt 286  Q
    |||||| ||| |||| |||||||||||| ||||||||||||||||    
T  9629436 cgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 19602178 - 19602234
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| ||||| | ||||||||||| | |||||||| | |||||||||||||||||||    
T  19602178 acaccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 19230312 - 19230367
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  19230312 acacgacacctataattacattgaattatgttattttctcaaattattatctatgt 19230367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 31243530 - 31243600
Alignment:
Q  218 cggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||||| || |||||||| |||| |||||||||||||| | |||||||||| ||||||||||||||||||    
T  31243530 cggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 20743275 - 20743342
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||| ||||| ||||||||||||| | |||||||||| |||||||||||||||||||| ||| |||||    
T  20743275 acaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgt 20743342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 24343569 - 24343502
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||| |||||||||||||| |||| | |||||||||| |||||||||||||||||||| ||| |||||    
T  24343569 acaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgt 24343502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 12084277 - 12084215
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||||||||||||| ||||||||||||| |  ||||||||||||||||||||  |||||||||    
T  12084277 gacacgacacctataattatattgaattttactattttctcaaattattatcggtgttggcgt 12084215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 14465300 - 14465347
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||    
T  14465300 cgacacatatgattaaattgaattatgtcattttctcaaattattatc 14465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 18513248 - 18513294
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  18513248 gacacatatgattacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 5654599 - 5654644
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatc 5654644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 43299984 - 43300025
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  43299984 tatgattacattgaattatgtaattttctcaaattattatcc 43300025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 43300662 - 43300621
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  43300662 tatgattacattgaattatgtaattttctcaaattattatcc 43300621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 5177026 - 5176982
Alignment:
Q  253 attatattgaattatgttattttctcaaattattatccatgttgg 297  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||    
T  5177026 attacattgaattatgttattttctcaaaatattatcaatgttgg 5176982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 10546194 - 10546154
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 8820470 - 8820407
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 296  Q
    |||| |||||||||| ||||| |  |||||||||||| ||||| ||||||||||||| ||||||    
T  8820470 acaccgacacgacacatatgactccattgaattatgtgattttatcaaattattatcgatgttg 8820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 23915171 - 23915136
Alignment:
Q  253 attatattgaattatgttattttctcaaattattat 288  Q
    |||||||||||||||||||||||||||||| |||||    
T  23915171 attatattgaattatgttattttctcaaatgattat 23915136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 25390892 - 25390938
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||||| |||| |||||||||||||||| ||||||| ||||||||||    
T  25390892 cgacacatatggttatattgaattatgtcattttctaaaattattat 25390938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 46180944 - 46180986
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattatt 286  Q
    |||| |||||||| | |||||||||||||||||||||||||||    
T  46180944 acacatatgattacactgaattatgttattttctcaaattatt 46180986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 3144649 - 3144706
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||| ||||||||||||    
T  3144649 acaccgacacgacacctatgattacactaaattatatcattttctgaaattattatcc 3144706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 6285061 - 6285106
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||||||| || |||||||||||| || |||||||||||||||||    
T  6285061 gacacctataatcatattgaattatattgttttctcaaattattat 6285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 33950189 - 33950144
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||| |||||||| ||| |||||||| |||||||||||||||||    
T  33950189 cgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 34589705 - 34589759
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| ||||||||||  ||||||| |||||||||||| ||||||||||||| |||||    
T  34589705 acactgacacgacac--atgattacattgaattatgtcattttctcaaattgttatc 34589759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 44796979 - 44797012
Alignment:
Q  253 attatattgaattatgttattttctcaaattatt 286  Q
    |||| |||||||||||||||||||||||||||||    
T  44796979 attacattgaattatgttattttctcaaattatt 44797012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 2976739 - 2976695
Alignment:
Q  250 atgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    ||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  2976739 atgattacattcaattatgtcattttctcaaattattacccatgt 2976695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 11110256 - 11110212
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatt 286  Q
    |||||| |||||||| || ||||||||| ||||||||||||||||    
T  11110256 cgacacatatgattacatcgaattatgtcattttctcaaattatt 11110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 16402213 - 16402265
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||| |||| |||| | || || |||||||||||||||||||||||||    
T  16402213 gacacgacagctataattacactgtatcatgttattttctcaaattattatcc 16402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 6936397 - 6936460
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 296  Q
    |||||||||||||||||||||||| | | |||||||| ||||||||| |||||||||| |||||    
T  6936397 acacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttg 6936460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 11634127 - 11634178
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatcc 11634178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 40747780 - 40747827
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattattatcc 40747827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 48785283 - 48785317
Alignment:
Q  255 tatattgaattatgttattttctcaaattattatc 289  Q
    |||||||||||||||||||||||||||||||||||    
T  48785283 tatattgaattatgttattttctcaaattattatc 48785317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 42004944 - 42005001
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||| ||||| ||||||||||||| | | |||||||| ||||||||||||||||||||    
T  42004944 acaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatcc 42005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 39101178 - 39101234
Alignment:
Q  232 aacacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||| || ||||||||||| |||| | | |||||||||||||||||||||||||||    
T  39101178 aacaccgaaacgacacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 2445923 - 2445880
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattat 285  Q
    |||||| |||||||| |||||||||||| |||||||||||||||    
T  2445923 cgacacatatgattaaattgaattatgtcattttctcaaattat 2445880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 11412774 - 11412821
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||||||||| | |||||||||||| ||||||||| |||||||||    
T  11412774 cgacacctatgatcacattgaattatgtcattttctcatattattatc 11412821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 11571628 - 11571585
Alignment:
Q  252 gattatattgaattatgttattttctcaaattattatccatgtt 295  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||    
T  11571628 gattacattgaattatgtcattttctcaaattattatccttgtt 11571585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 24176373 - 24176420
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||||| |||| | ||||| ||||||||||||||||||||||||    
T  24176373 cgacacctataattacactgaatgatgttattttctcaaattattatc 24176420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 609471 - 609509
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattatta 287  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  609471 tatgattatgttgaattatgtaattttctcaaattatta 609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 1262926 - 1262892
Alignment:
Q  253 attatattgaattatgttattttctcaaattatta 287  Q
    ||||||||||||||||| |||||||||||||||||    
T  1262926 attatattgaattatgtgattttctcaaattatta 1262892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 3921712 - 3921674
Alignment:
Q  250 atgattatattgaattatgttattttctcaaattattat 288  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  3921712 atgattacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 22794080 - 22794138
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 296  Q
    |||||||||||||| |||| | || ||||||| ||||| |||||||||||||| |||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgttg 22794138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 43609833 - 43609871
Alignment:
Q  251 tgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  43609833 tgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 17080896 - 17080933
Alignment:
Q  251 tgattatattgaattatgttattttctcaaattattat 288  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  17080896 tgattacattcaattatgttattttctcaaattattat 17080933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 24806981 - 24806944
Alignment:
Q  259 ttgaattatgttattttctcaaattattatccatgttg 296  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  24806981 ttgaattatgttattttctcaaaattttatccatgttg 24806944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 36878514 - 36878469
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||||||| |||| | |||||||||| |||||||||||||||||    
T  36878514 cgacacctataattacactgaattatgtgattttctcaaattatta 36878469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 43942368 - 43942331
Alignment:
Q  251 tgattatattgaattatgttattttctcaaattattat 288  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  43942368 tgattacattgaattatgttattttctcaaatcattat 43942331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 6427401 - 6427345
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||| ||| |||| |||||||||||| ||||||||||||||||| |  |||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgt 6427345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 30847727 - 30847771
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    ||||| |||||||| |||||||||||| ||||| |||||||||||    
T  30847727 gacacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 3508103 - 3508058
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||    
T  3508103 acacatatgattacattgaattatgttattttctcaaattattatc 3508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 8798838 - 8798882
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||    
T  8798838 gacacatataattatattgaattatgttattttctcaaattatta 8798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 37225756 - 37225795
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattat 288  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  37225756 tatgattacattgaattatgttattttctcaaattattat 37225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 40064013 - 40063958
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||| |||||||| |||||||||| | |||||||||| ||||||||||||||||||    
T  40064013 acaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 30068037 - 30068082
Alignment:
Q  245 cacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||    
T  30068037 cacctacgattatactgaattatgtcattttctcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 13009475 - 13009547
Alignment:
Q  218 cggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||| || ||| |||| |||||||||| |||||||| | | |||||| || |||||||||||||||||||    
T  13009475 cggtgtctgacacctacaccgacacgacacttatgattacactaaattatattgttttctcaaattattatcc 13009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 13845309 - 13845241
Alignment:
Q  220 gtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||| || ||| ||||||||||||||||||||||||   | |||||| | ||||||||||||||||||    
T  13845309 gtgtccgacaccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 33697147 - 33697199
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    |||||| |||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  33697147 cgacacgtatggttatattcaattattttattttctcaaattattatcaatgt 33697199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 35431142 - 35431194
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||||||||||||| | | || ||||| ||||||||||||||||||||    
T  35431142 gacacgacacctatgattacactaaaatatgtcattttctcaaattattatcc 35431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 3658203 - 3658152
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||||||||||||||||| | |||| ||  ||||||||||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatcc 3658152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 9936870 - 9936815
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    |||| |||| ||||||||||||||||||| | ||||||| ||||||||||| ||||    
T  9936870 acacaacacatatgattatattgaattatatcattttcttaaattattatcgatgt 9936815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 12985438 - 12985399
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattat 288  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  12985438 tatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 28883879 - 28883930
Alignment:
Q  237 agacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||| |||||||||||||  | |||||||||| ||||||||||||||||||    
T  28883879 agacaagacacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 44067578 - 44067511
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||| |||||||||| ||| |||| | || ||||||| |||||||||||||||||||| ||| |||||    
T  44067578 acaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgt 44067511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Complemental strand, 14227259 - 14227229
Alignment:
Q  258 attgaattatgttattttctcaaattattat 288  Q
    |||||||||||||||||||||||||||||||    
T  14227259 attgaattatgttattttctcaaattattat 14227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 29198492 - 29198530
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  29198492 tatgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 39820486 - 39820436
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||||||||||||||||| | | |||||| | ||||||||||||||||||    
T  39820486 gacacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 22771013 - 22770968
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| |||||||| ||||||||||||| |||| |||||||||||||    
T  22771013 acacatatgattacattgaattatgttgttttatcaaattattatc 22770968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 31236583 - 31236628
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||    
T  31236583 cgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 1676769 - 1676717
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||||||||||||| | | || ||||| |||||| |||||||||||||    
T  1676769 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatcc 1676717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 3025603 - 3025559
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    ||||||||| |||| | |||||||||| |||||||||||||||||    
T  3025603 gacacctataattacactgaattatgtgattttctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 26466561 - 26466601
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  26466561 tatgattgcattgaattatcttattttctcaaattattatc 26466601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 5938534 - 5938477
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||| ||||| |||||||| |||||| |||||||||||||||| ||||||||||||||    
T  5938534 acaccgacacaacacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 17780081 - 17780142
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    |||| |||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||||    
T  17780081 acaccgacacgacacctattattacatagaattatgtcattttcttaaattattatccatgt 17780142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 2525850 - 2525897
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  2525850 cgacacatatgattatattgaattatgtcatttgctcaaattattatc 2525897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 38134412 - 38134459
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||    
T  38134412 cgacacatatgattacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 23930281 - 23930224
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||| ||||| ||||||||||||| | |||||||||| |||||||||||||| |||||    
T  23930281 acaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatcc 23930224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 29812661 - 29812716
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||||||||||||||    
T  29812661 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 43250055 - 43249988
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||| |||||||||| ||| |||| | || ||||||| |||||||||||||||||||| ||| |||||    
T  43250055 acaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgt 43249988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 3801207 - 3801257
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||| |||| ||||||||  ||||||||||||||||||| ||||||||||    
T  3801207 gacaccacacttatgattaccttgaattatgttattttcttaaattattat 3801257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 19206103 - 19206037
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgt 308  Q
    |||||| ||| |||||| |||||||||| ||||||||||||||||| |  ||| ||||| |||||||    
T  19206103 cgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgt 19206037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 35238199 - 35238237
Alignment:
Q  251 tgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  35238199 tgattatattgaattatgtcattttctcaaaatattatc 35238237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 44172905 - 44172943
Alignment:
Q  251 tgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  44172905 tgattacattgaattatgtcattttctcaaattattatc 44172943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 4909203 - 4909158
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    ||||| |||||||| | |||||||||| ||||||||||||||||||    
T  4909203 gacacatatgattacaatgaattatgtaattttctcaaattattat 4909158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 24146869 - 24146824
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatta 287  Q
    |||||| ||| ||||||||||||||||| ||||||| |||||||||    
T  24146869 cgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 38804558 - 38804619
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    ||||||||||||||||||   || ||||||| ||||||| |||||||||||| ||| |||||    
T  38804558 acacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgt 38804619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 7133287 - 7133327
Alignment:
Q  245 cacctatgattatattgaattatgttattttctcaaattat 285  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  7133287 cacctatgattacactgaattatgtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 23751957 - 23751905
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||||||||||||| | | |||||| | ||||| ||||||||||||||    
T  23751957 gacacgacacctatgattacactaaattatatcattttatcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 36314635 - 36314679
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||| |||||||| |||||| ||||| ||||||||||||||||||    
T  36314635 acacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 41229304 - 41229348
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattatt 286  Q
    |||| ||||||||||||  ||||||||| ||||||||||||||||    
T  41229304 cgacgcctatgattatacagaattatgtcattttctcaaattatt 41229348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 10535762 - 10535826
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtatt 303  Q
    ||||||||| |||||||| | |||||||||| |||||||||||||||||||  ||| ||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtatt 10535826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 12748741 - 12748685
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    ||||| ||||||||||||| | |||| ||||| ||||||||||||||||||||||||    
T  12748741 gacacaacacctatgattacactgaactatgtcattttctcaaattattatccatgt 12748685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 24011098 - 24011031
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 300  Q
    |||| ||| ||||||||||||||| | | |||||||| ||||||||||||||||||| |||| |||||    
T  24011098 acaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatcaatgtcggcgt 24011031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 25544543 - 25544488
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||| ||||||||||||||||||| | |||||||| | ||||||||||||||||||    
T  25544543 acaccgacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 2073979 - 2073941
Alignment:
Q  258 attgaattatgttattttctcaaattattatccatgttg 296  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  2073979 attgaattatgttattttctcaaattattatcgatgttg 2073941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 18571024 - 18570978
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 30563471 - 30563414
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    |||| ||||| ||||||||  ||| |||||||||||| ||||||||||||||||||||    
T  30563471 acaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatcc 30563414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 4690336 - 4690296
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  4690336 tatgattgtattaaattatgttattttctcaaattattatc 4690296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 11308001 - 11308053
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattat 285  Q
    |||| ||||||||||||||||||| | |||||||||| ||||| |||||||||    
T  11308001 acaccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 19574040 - 19573984
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| |||||| ||||||| |||| | |||||||||||||||||| |||||||||||    
T  19574040 acaccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 19613621 - 19613665
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||    
T  19613621 acacatatcattacattgaattatgttattttctcaaattattat 19613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 23354649 - 23354705
Alignment:
Q  233 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| ||||||||||||||||||| | | |||||| | |||||||||||||||||||    
T  23354649 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 10250770 - 10250727
Alignment:
Q  251 tgattatattgaattatgttattttctcaaattattatccatgt 294  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||    
T  10250770 tgattacattgaattgtgttattttctcaaattattatcaatgt 10250727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 34006997 - 34007044
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||||||||||| | |||||||||| | |||||||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 44605156 - 44605191
Alignment:
Q  253 attatattgaattatgttattttctcaaattattat 288  Q
    |||| |||||||||||||||||||||||||||||||    
T  44605156 attacattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 23406920 - 23406874
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||||||||||  |||||||||| ||||||| |||||||||||    
T  23406920 gacacctatgattattctgaattatgtaattttcttaaattattatc 23406874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 30394509 - 30394441
Alignment:
Q  243 gacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgtatg 311  Q
    |||||||||||||||| |||||||||| |||||||| ||| ||| ||  |||| | || ||||||||||    
T  30394509 gacacctatgattatactgaattatgtcattttctccaatgattgtctgtgttagagtgttggtgtatg 30394441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 31026741 - 31026701
Alignment:
Q  249 tatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||||||| |||||||||||| ||||||| |||||||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 36611942 - 36611906
Alignment:
Q  253 attatattgaa-ttatgttattttctcaaattattat 288  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36611942 attatattgaaattatgttattttctcaaattattat 36611906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 40682024 - 40681988
Alignment:
Q  253 attatattgaattatgttattttctcaaattattatc 289  Q
    |||| |||||||||||| |||||||||||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatc 40681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 240027 - 240073
Alignment:
Q  242 cgacacctatgattatattgaattatgttattttctcaaattattat 288  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  240027 cgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 8055 - 8107
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||    
T  8055 gacacgatacctatgtttacactgaattatgtcattttctcaaattattatcc 8107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 225271 - 225321
Alignment:
Q  239 acacgacacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    ||||||||| ||| |||| |||| ||||||| |||||||||||||||||||    
T  225271 acacgacacttataattacattgtattatgtcattttctcaaattattatc 225321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 99944 - 99899
Alignment:
Q  244 acacctatgattatattgaattatgttattttctcaaattattatc 289  Q
    |||| ||| |||| |||||||||||||||||||| |||||||||||    
T  99944 acacatataattacattgaattatgttattttctaaaattattatc 99899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 2006 - 1954
Alignment:
Q  238 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 290  Q
    ||||||||||||||||||| | | || ||||| |||||| |||||||||||||    
T  2006 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatcc 1954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 102947 - 102903
Alignment:
Q  253 attatattgaattatgttattttctcaaattattatccatgttgg 297  Q
    |||| |||||||||| | ||||||||||||||||||| |||||||    
T  102947 attacattgaattatatcattttctcaaattattatcgatgttgg 102903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University