View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_low_17 (Length: 298)
Name: NF6790_low_17
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 44358883 - 44359147
Alignment:
| Q |
16 |
atagacatgttagtattaacgtaacacaacaaataagtgtggccaaaagagtatgctagctaaatgtaccttgaatggctcattgtctgttcggtagaca |
115 |
Q |
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| T |
44358883 |
atagacatgttagtattaacgtaacacaacaaataagtgtggccaaaagagtatgctagctaaatgtaccttgaatggctcattgtctgttcggtagaca |
44358982 |
T |
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| Q |
116 |
ataccagggacatcatgtagccaaaatgggaatccccttcaattttagcagttagcattattatgtgttagagatgacaattttggcttagtaattggga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44358983 |
ataccagggacatcatgtagccaaaatgggaatccccttcaattttagcagttagcattattatgtgttagagatgacaattttggcttagtaattggga |
44359082 |
T |
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| Q |
216 |
ataaaattgagtacatttttatgtaagttagtgaaagtacccgtaattccattcactctcgatga |
280 |
Q |
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| T |
44359083 |
ataaaattgagtacatttttatgtaagttagtgaaactacccgtaattccattcactctcgatga |
44359147 |
T |
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