View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6790_low_18 (Length: 259)

Name: NF6790_low_18
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6790_low_18
NF6790_low_18
[»] chr3 (3 HSPs)
chr3 (39-255)||(42091811-42092028)
chr3 (199-254)||(54437805-54437860)
chr3 (198-254)||(21570366-21570422)
[»] chr6 (3 HSPs)
chr6 (199-256)||(32342599-32342656)
chr6 (203-245)||(20206485-20206527)
chr6 (203-245)||(22100508-22100550)
[»] chr4 (3 HSPs)
chr4 (110-254)||(25062396-25062544)
chr4 (199-239)||(20512704-20512744)
chr4 (199-243)||(54000079-54000123)
[»] chr8 (4 HSPs)
chr8 (110-240)||(7405428-7405556)
chr8 (110-255)||(32166655-32166799)
chr8 (108-164)||(29093611-29093668)
chr8 (200-256)||(35574659-35574715)
[»] chr5 (6 HSPs)
chr5 (199-251)||(14258902-14258954)
chr5 (199-239)||(973110-973150)
chr5 (200-243)||(37077760-37077803)
chr5 (203-245)||(2243346-2243388)
chr5 (199-245)||(7215326-7215372)
chr5 (210-254)||(972839-972883)
[»] chr1 (7 HSPs)
chr1 (203-245)||(35956986-35957028)
chr1 (199-245)||(42819620-42819666)
chr1 (203-245)||(52432836-52432878)
chr1 (198-254)||(34601630-34601686)
chr1 (199-255)||(46080970-46081026)
chr1 (199-239)||(2534295-2534334)
chr1 (199-255)||(10775162-10775218)
[»] chr7 (5 HSPs)
chr7 (108-184)||(31152824-31152901)
chr7 (108-184)||(31171385-31171462)
chr7 (199-233)||(27651382-27651416)
chr7 (199-255)||(8900670-8900726)
chr7 (199-243)||(34891532-34891576)
[»] chr2 (6 HSPs)
chr2 (198-255)||(16576246-16576303)
chr2 (199-252)||(28282823-28282876)
chr2 (199-243)||(9931278-9931322)
chr2 (108-173)||(28282725-28282791)
chr2 (199-244)||(16576416-16576461)
chr2 (198-254)||(2248957-2249013)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 255
Target Start/End: Complemental strand, 42092028 - 42091811
Alignment:
Q  39 gagataatggaagagataaatatgcaatagttcacatccaaggtgaatgctacatctagtcctcctacatccatctctttcgttccataatcaagtctta 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42092028 gagataatggaagagataaatatgcaatagttcacatccaaggtgaatgctacatctagtcctcctacatccatctctttcgttccataatcaagtctta 42091929  T
Q  139 cttgtgatta-gggtaaattacccccaattcgtcaagggatattgtatgtctcgccaatgcttttttcttacaattaattatcattttcatctcaaaaac 237  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  42091928 cttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttacaattaattatcattttcatctcaaaaac 42091829  T
Q  238 atcaaactctttcatctc 255  Q
    |||||||| |||||||||    
T  42091828 atcaaactttttcatctc 42091811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 54437805 - 54437860
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 254  Q
    |||||||||||||| | ||| |||||| |||||||||||||||||||  |||||||    
T  54437805 ttttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 21570366 - 21570422
Alignment:
Q  198 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 254  Q
    |||| ||||||||||| ||||  ||||||||| ||| ||||||||||| ||||||||    
T  21570366 ctttattcttacaattgattactattttcatcacaagaacatcaaactttttcatct 21570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 32342599 - 32342656
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctca 256  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  32342599 ttttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctca 32342656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 20206527 - 20206485
Alignment:
Q  203 ttcttacaattaattatcattttcatctcaaaaacatcaaact 245  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaact 20206485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 22100550 - 22100508
Alignment:
Q  203 ttcttacaattaattatcattttcatctcaaaaacatcaaact 245  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaact 22100508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 25062396 - 25062544
Alignment:
Q  110 catctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaagggatattgtatgtctcgccaat---gcttttttc 205  Q
    |||||| || ||||||||||||| || ||||||| |||| ||||||||||||| |||||| |||||| ||| |||| |  || |||||   | |||||||    
T  25062396 catctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatcaaggaataatgtaggcttcaccaatttggtttttttc 25062495  T
Q  206 ttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 254  Q
    ||||||| ||||| | |||||||||||| || ||||||||  |||||||    
T  25062496 ttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 20512744 - 20512704
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacat 239  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  20512744 ttttttcttacaattagttatctttttcatctcaaaaacat 20512704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 54000123 - 54000079
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 243  Q
    ||||||||||| || ||||| |||||||||||||| |||||||||    
T  54000123 ttttttcttactatcaattaccattttcatctcaagaacatcaaa 54000079  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 7405556 - 7405428
Alignment:
Q  110 catctctttcgttccataatcaagtcttacttgtgattaggg-taaattacccccaattcgtcaagggatattgtatgtctcgccaa-tgcttttttctt 207  Q
    |||||| |||||||||||||| |||||||    ||||||||| ||||||| |||||| || ||||||| || |||||| | | |||| |  |||||||||    
T  7405556 catctcgttcgttccataatcgagtctta----tgattaggggtaaattatccccaactcatcaaggggtaatgtatgccccaccaaattgttttttctt 7405461  T
Q  208 acaattaattatcattttcatctcaaaaacatc 240  Q
    |||||||||| |||||||||| |||| ||||||    
T  7405460 acaattaattgtcattttcatttcaagaacatc 7405428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 32166799 - 32166655
Alignment:
Q  110 catctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgtatgtctcgccaatgcttttttctta 208  Q
    |||||||||||||||| |||| | || ||||||| ||||| |||||||||| |||||||| |||| | | | |||||| |||  | ||  ||||| ||||    
T  32166799 catctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatg-ctcatcgatagttttt-ctta 32166702  T
Q  209 caattaattatcattttcatctcaaaaacatcaaactctttcatctc 255  Q
    | || |||||||||||||||||||| |||||||||||  ||||||||    
T  32166701 ctatcaattatcattttcatctcaagaacatcaaacttcttcatctc 32166655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 29093611 - 29093668
Alignment:
Q  108 tccatctctttcgttccataatcaagtcttacttgtgatt-agggtaaattaccccca 164  Q
    ||||||||||||||||||||||||| || ||||||  ||| |||||||||||||||||    
T  29093611 tccatctctttcgttccataatcaaatcatacttggtattgagggtaaattaccccca 29093668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 35574715 - 35574659
Alignment:
Q  200 tttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctca 256  Q
    ||||||||||||||| |||  |||||||||| || ||||||||| | ||||||||||    
T  35574715 tttttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctca 35574659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 14258954 - 14258902
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttca 251  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||| |||||    
T  14258954 ttttttattataattatttatcattttcatctcaaaaacatcaaactttttca 14258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 973110 - 973150
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacat 239  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  973110 ttttttcttacaattagttatcatttttatctcaaaaacat 973150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 37077760 - 37077803
Alignment:
Q  200 tttttcttacaattaattatcattttcatctcaaaaacatcaaa 243  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaa 37077803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 2243388 - 2243346
Alignment:
Q  203 ttcttacaattaattatcattttcatctcaaaaacatcaaact 245  Q
    |||||||||||| ||| |||||||||||||| |||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaact 2243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 7215372 - 7215326
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaact 245  Q
    |||||||||||||| || || |||||||||||||| |||||||||||    
T  7215372 ttttttcttacaatcaactaccattttcatctcaagaacatcaaact 7215326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 972839 - 972883
Alignment:
Q  210 aattaattatcattttcatctcaaaaacatcaaactctttcatct 254  Q
    ||||| |||||||||||||||||| |||||||||||  |||||||    
T  972839 aattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 35956986 - 35957028
Alignment:
Q  203 ttcttacaattaattatcattttcatctcaaaaacatcaaact 245  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  35956986 ttcttacaattaattaccatttttatctcaaaaacatcaaact 35957028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 42819620 - 42819666
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaact 245  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||    
T  42819620 ttttttcttacaatcaattatcattttcatctcaagaacataaaact 42819666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 52432836 - 52432878
Alignment:
Q  203 ttcttacaattaattatcattttcatctcaaaaacatcaaact 245  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaact 52432878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 34601686 - 34601630
Alignment:
Q  198 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 254  Q
    |||| ||||||| |||| |||| ||||||||||||||||||||||||  ||||||||    
T  34601686 ctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatct 34601630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 46080970 - 46081026
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 255  Q
    |||||||||||||| ||||| |||||||||||||| ||||| |||||  ||||||||    
T  46080970 ttttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctc 46081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 2534334 - 2534295
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacat 239  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  2534334 ttttttcgtacaattaattatcatttt-atctcaaaaacat 2534295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 10775162 - 10775218
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 255  Q
    |||||||||| ||| ||||| ||||||||||| || |||||||||||  ||||||||    
T  10775162 ttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctc 10775218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 31152901 - 31152824
Alignment:
Q  108 tccatctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgta 184  Q
    ||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||||||||||| ||||| |||| ||||    
T  31152901 tccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgta 31152824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 31171462 - 31171385
Alignment:
Q  108 tccatctctttcgttccataatcaagtcttacttgtgattag-ggtaaattacccccaattcgtcaagggatattgta 184  Q
    ||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||||||||||| ||||| |||| ||||    
T  31171462 tccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgta 31171385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 27651416 - 27651382
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaa 233  Q
    |||||||||||||| ||||||||||||||||||||    
T  27651416 ttttttcttacaatcaattatcattttcatctcaa 27651382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 8900726 - 8900670
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 255  Q
    |||||||||||||| ||||| |||||| ||||||| |||| ||||||  ||||||||    
T  8900726 ttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 34891532 - 34891576
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 243  Q
    ||||||||||| |||| |||||||||| ||||||| |||||||||    
T  34891532 ttttttcttactattagttatcattttgatctcaagaacatcaaa 34891576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 16576246 - 16576303
Alignment:
Q  198 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatctc 255  Q
    ||||||||||||||| ||||| ||||||| |||||| |||||||||||  ||||||||    
T  16576246 cttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctc 16576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 28282823 - 28282876
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcat 252  Q
    |||||||||||||| |||||||||||||||||| | || |||||||| ||||||    
T  28282823 ttttttcttacaatcaattatcattttcatctccataatatcaaactttttcat 28282876  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 9931278 - 9931322
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaa 243  Q
    |||||| |||||||| |||||||||||||||| ||||||||||||    
T  9931278 tttttttttacaatttattatcattttcatcttaaaaacatcaaa 9931322  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 28282725 - 28282791
Alignment:
Q  108 tccatctctttcgttccataatcaagtcttacttgtgatta-gggtaaattacccccaattcgtcaa 173  Q
    |||||||| |||||||||||||||| | |||||||| |||| ||||||||||||  |||||| ||||    
T  28282725 tccatctcattcgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 16576416 - 16576461
Alignment:
Q  199 ttttttcttacaattaattatcattttcatctcaaaaacatcaaac 244  Q
    |||||||||||||| | ||||||||||||| ||||||||| |||||    
T  16576416 ttttttcttacaatcatttatcattttcatttcaaaaacaacaaac 16576461  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 2249013 - 2248957
Alignment:
Q  198 cttttttcttacaattaattatcattttcatctcaaaaacatcaaactctttcatct 254  Q
    |||| |||||| ||||| ||| |||||||||||||||||||| |||||  |||||||    
T  2249013 ctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatct 2248957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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