View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6790_low_2 (Length: 650)

Name: NF6790_low_2
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6790_low_2
NF6790_low_2
[»] chr8 (3 HSPs)
chr8 (145-637)||(26797740-26798239)
chr8 (23-74)||(26798308-26798359)
chr8 (455-493)||(14955263-14955301)
[»] chr1 (3 HSPs)
chr1 (460-527)||(49899080-49899147)
chr1 (460-527)||(7845152-7845219)
chr1 (460-507)||(10483284-10483331)
[»] chr6 (1 HSPs)
chr6 (460-493)||(31535696-31535729)
[»] chr4 (3 HSPs)
chr4 (455-520)||(38868845-38868910)
chr4 (472-527)||(36363568-36363623)
chr4 (463-527)||(33095268-33095332)
[»] chr7 (1 HSPs)
chr7 (460-527)||(28299689-28299756)
[»] chr2 (2 HSPs)
chr2 (460-523)||(752199-752262)
chr2 (460-510)||(41311710-41311760)
[»] chr3 (1 HSPs)
chr3 (455-491)||(42983905-42983941)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 145 - 637
Target Start/End: Complemental strand, 26798239 - 26797740
Alignment:
Q  145 tttgtaaatttaaggggccatcgatggcagtgattatgcaactagcgtttcaaagcatgggaattgtgtatggagacctaggaacatcacctttgtatgt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26798239 tttgtaaatttaaggggccatcgatggcagtgattatgcaactagcgtttcaaagcatgggaattgtgtatggagacctaggaacatcacctttgtatgt 26798140  T
Q  245 gtatacaagtattttcgccaatggtgtaaaggacaatgatgatattttaggggttttttctttgatcttttacaccatcactcttgtaactcttgttaag 344  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26798139 gtatacaagtattttcgccaatggtgtaaaggacaacgatgatattttaggggttttttctttgatcttttacaccatcactcttgtaactcttgttaag 26798040  T
Q  345 tatgtattcatcgtcttgcgtgccactgataatggggacggtaagcatgca--------tgcaaactacgtatattta----atttttaggttttgctaa 432  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||    |||||||||| |||||||    
T  26798039 tatgtattcatcgtcttgcgtgctactgataatggggacggtaagcatgcatgcatgcgtgcaaactacgtatatttatttcatttttaggtcttgctaa 26797940  T
Q  433 cgaatgctctgaggatagatagaaagctactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagactttttagggca 532  Q
    | |||||||||||    ||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||||||||   |||||||| ||||| ||||    
T  26797939 caaatgctctgag----gatagaaaattactttttaaacttttaatgtgttaaatgcatcagttccaaaacaaaattttctctttagacattttacggca 26797844  T
Q  533 cttgttagcatttccttcattttttcaatttaatcttctggttttgcaacatatataataaagaactactactatttttaggagggacttttgctttata 632  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26797843 cttgttaacatttcctt-attttttcaatttaatcttctggttttgcaacatatataataaagaactactactatttttaggagggacttttgctttata 26797745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 26798359 - 26798308
Alignment:
Q  23 ggaatcacgcagcttaccttcttcatcacatgcttctaaagtaaagtattcc 74  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26798359 ggaatcacgcagtttaccttcttcatcacatgcttctaaagtaaagtattcc 26798308  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 493
Target Start/End: Original strand, 14955263 - 14955301
Alignment:
Q  455 aaagctactttttaaactttcaatgtgttaaatgcatca 493  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  14955263 aaagttactttttaaactttcaatgtgttgaatgcatca 14955301  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 527
Target Start/End: Original strand, 49899080 - 49899147
Alignment:
Q  460 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 527  Q
    ||||||| ||| |||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  49899080 tacttttcaaaatttcaatgtgttgaatgcatcatttccaaaacaaagtttctgctttagacttttta 49899147  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 527
Target Start/End: Complemental strand, 7845219 - 7845152
Alignment:
Q  460 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 527  Q
    ||||||||||||||| ||| |||||||||||||  | | |||||||||||||| ||||||||||||||    
T  7845219 tactttttaaacttttaatatgttaaatgcatccttactaaaacaaaatttcttctttagacttttta 7845152  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 10483331 - 10483284
Alignment:
Q  460 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaa 507  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||    
T  10483331 tacttttaaaactttcaatgtattaaatgcatcatttctaaaacaaaa 10483284  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 493
Target Start/End: Complemental strand, 31535729 - 31535696
Alignment:
Q  460 tactttttaaactttcaatgtgttaaatgcatca 493  Q
    ||||||||||||||||||||||||||||||||||    
T  31535729 tactttttaaactttcaatgtgttaaatgcatca 31535696  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 520
Target Start/End: Complemental strand, 38868910 - 38868845
Alignment:
Q  455 aaagctactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttaga 520  Q
    |||| |||||||||||||||||||||||| ||||||||| | | || ||||||||||  |||||||    
T  38868910 aaagttactttttaaactttcaatgtgttgaatgcatcattcccaagacaaaatttcctctttaga 38868845  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 36363623 - 36363568
Alignment:
Q  472 tttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 527  Q
    |||||||||||| ||||||||| | | |||||||||||||| ||||| ||||||||    
T  36363623 tttcaatgtgttgaatgcatcaatcccaaaacaaaatttcttctttaaacttttta 36363568  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 463 - 527
Target Start/End: Original strand, 33095268 - 33095332
Alignment:
Q  463 tttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 527  Q
    ||||||||| |||||| |||||||||||||| ||| |  ||||||||||| | ||| ||||||||    
T  33095268 tttttaaacattcaatatgttaaatgcatcatttctatgacaaaatttcttccttaaacttttta 33095332  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 527
Target Start/End: Complemental strand, 28299756 - 28299689
Alignment:
Q  460 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 527  Q
    ||||||||||| |||||||   |||||||||||| ||| |||||||||||| | ||||| ||||||||    
T  28299756 tactttttaaaatttcaatacattaaatgcatcatttctaaaacaaaatttattctttaaacttttta 28299689  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 523
Target Start/End: Original strand, 752199 - 752262
Alignment:
Q  460 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagactt 523  Q
    |||||||| || |||||||||||| ||||||||| | | || ||||||||||| ||||||||||    
T  752199 tactttttcaagtttcaatgtgttgaatgcatcaatcccaagacaaaatttcttctttagactt 752262  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 510
Target Start/End: Complemental strand, 41311760 - 41311710
Alignment:
Q  460 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaattt 510  Q
    ||||||||||||||||||| |||||||||||| | ||  ||||||||||||    
T  41311760 tactttttaaactttcaatttgttaaatgcataattttcaaaacaaaattt 41311710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 42983941 - 42983905
Alignment:
Q  455 aaagctactttttaaactttcaatgtgttaaatgcat 491  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  42983941 aaagttactttttaaattttcaatgtgttaaatgcat 42983905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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