View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6790_low_4 (Length: 617)
Name: NF6790_low_4
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_low_4 |
 | |
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| [»] scaffold1148 (1 HSPs) |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 603
Target Start/End: Original strand, 30504681 - 30505267
Alignment:
| Q |
17 |
gacatcagcggagccaccaaggccttgacgaatgcgtctctttttcgacggtttgtcacgttttattttactaattttccaccgttcttatcgaattttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30504681 |
gacatcagcggagccaccaaggccttgacgaatgcggctctttttcgacggtatgtcacgttttattttactaattttccaccgttcttatcgaattttt |
30504780 |
T |
|
| Q |
117 |
atttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
30504781 |
atttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggagaacggtacggttttgtgagatactc |
30504880 |
T |
|
| Q |
217 |
gaatgtccgagatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggca |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30504881 |
gaatgtccgggatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggca |
30504980 |
T |
|
| Q |
317 |
actagagtggttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggttggtaagggagttaaatcagttgttgagggtg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30504981 |
gctagagtggttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggtcggtaagggagttaaatcagttgttgagggtg |
30505080 |
T |
|
| Q |
417 |
atgtgatggaagctggatcgaaagctgttgaaggtcaatcggatggactagagggacgggtgccacaagcaagagtgggtgcgttggataatgttcaggt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
30505081 |
atgtgatggaagctggatcgaaagctgttgaaggccaatcggatggactagagggacgggtgccacaagccagagtgggtgcgttggataacgttcaggt |
30505180 |
T |
|
| Q |
517 |
tggtgacgtgacggtgagcttgggtaaggggcctagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30505181 |
tggtgacgtgacggtgagcttgggtaaggggcatagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
30505267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 603
Target Start/End: Original strand, 30545024 - 30545610
Alignment:
| Q |
17 |
gacatcagcggagccaccaaggccttgacgaatgcgtctctttttcgacggtttgtcacgttttattttactaattttccaccgttcttatcgaattttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30545024 |
gacatcagcggagccaccaaggccttgacgaatgcggctctttttcgacggtatgtcacgttttattttactaattttccaccgttcttatcgaattttt |
30545123 |
T |
|
| Q |
117 |
atttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
30545124 |
atttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtggtaccccgtaggtgcaatgttaacggagaacggtacggttttgtgagatactc |
30545223 |
T |
|
| Q |
217 |
gaatgtccgagatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggca |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30545224 |
gaatgtccgggatgttagtaagttgttgaaagccgtgaatactgtttgctttggtaatttccaaattaaggcaaaagttgctaattttgacaaggcggca |
30545323 |
T |
|
| Q |
317 |
actagagtggttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggttggtaagggagttaaatcagttgttgagggtg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30545324 |
gctagagtggttgagaatttggtggttggcgcgggtgcgaaggataccgcgggaggaggtgttaaggtcggtaagggagttaaatcagttgttgagggtg |
30545423 |
T |
|
| Q |
417 |
atgtgatggaagctggatcgaaagctgttgaaggtcaatcggatggactagagggacgggtgccacaagcaagagtgggtgcgttggataatgttcaggt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
30545424 |
atgtgatggaagctggatcgaaagctgttgaaggccaatcggatggactagagggacgggtgccacaagccagagtgggtgcgttggataacgttcaggt |
30545523 |
T |
|
| Q |
517 |
tggtgacgtgacggtgagcttgggtaaggggcctagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30545524 |
tggtgacgtgacggtgagcttgggtaaggggcatagtaaggagcaacagggcggtagcgggaaaagtaagttcgttaagtttgatgt |
30545610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 59 - 276
Target Start/End: Complemental strand, 9872836 - 9872620
Alignment:
| Q |
59 |
tttcgacggtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatgctggacgagg |
158 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| | || ||| ||||||||||||| ||||| |||||||| ||||| |||||||| |||| |
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|
| T |
9872836 |
tttcgacggtttgtaactttttattttaccaattttccctcaaact-atcaaatttttatttacagaaaggttttgaggtatgtggtatgctggaagagg |
9872738 |
T |
|
| Q |
159 |
ttgtggtaccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactcgaatgtccgagatgttagtaagttgttgaaagccgtgaatac |
258 |
Q |
| |
|
| || || || ||||| | |||||||| ||||| | || ||||||||||| | || ||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
9872737 |
tggttgttcctagtaggcgtaatgttaatggggagctctatggttttgtgaggtgttctaatgttcgtgatgttagtaaattgttgaaagcagtgaatta |
9872638 |
T |
|
| Q |
259 |
tgtttgctttggtaattt |
276 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
9872637 |
tgtttgctttgataattt |
9872620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 15176482 - 15176547
Alignment:
| Q |
83 |
tttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatg |
148 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
15176482 |
tttactaattttccgtcgtacttatcgaatttttatttacagaaagggttagaggtttgtggcatg |
15176547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 21554393 - 21554316
Alignment:
| Q |
67 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtgg |
144 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||| ||||||||| || |||||||| |||||||| || |||||||| |
|
|
| T |
21554393 |
gtttgtcactttctattttactaattttccgccgtacttatcgaacttctatttacggaaagggttagaagtttgtgg |
21554316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 276
Target Start/End: Original strand, 28395143 - 28395352
Alignment:
| Q |
67 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtggta |
166 |
Q |
| |
|
||||||||| || ||||||||||| ||||| ||||| |||||||| || |||||||| ||||||||||| |||||||| ||| | || || || || || |
|
|
| T |
28395143 |
gtttgtcactttctattttactaactttccgccgtttttatcgaacttctatttacggaaagggtttgaagtttgtgggatgttagaagacgtggttgtt |
28395242 |
T |
|
| Q |
167 |
ccccgtaggtgcaatgttaacggggaacggtacggttttgtgagatactcgaatgtccgagatgttagtaagttgttgaaagccgtgaatactgtttgct |
266 |
Q |
| |
|
|| |||| | ||||| | ||||| || |||||||||||||| ||||| || || || || |||| ||||||||||| || ||| |||| |||| |
|
|
| T |
28395243 |
ccggctaggcgtaatgtggatggggatgtttatggttttgtgagatattcgaacgttcgtgacgtatgtaaattgttgaaagctgttaattctgtatgct |
28395342 |
T |
|
| Q |
267 |
ttggtaattt |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
28395343 |
ttggtaattt |
28395352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 18772905 - 18772828
Alignment:
| Q |
67 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtgg |
144 |
Q |
| |
|
||||||||| || ||||||||||| ||||| ||||| |||||||| || |||||||| |||||||| || |||||||| |
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|
| T |
18772905 |
gtttgtcactttctattttactaactttccgccgtttttatcgaacttctatttacgtaaagggttagaagtttgtgg |
18772828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1148
Description:
Target: scaffold1148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 321 - 422
Alignment:
| Q |
64 |
acggtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtggcatgctggacgaggttgtg |
163 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| || || || ||||||||||| || ||||| |||||||| ||||| || || || ||||| ||| |
|
|
| T |
321 |
acggtttgtcacattttattttaccaattttccgcctcaattgtcaaatttttatttgcgtaaaggatttgaggtatgtggaatactcgaggaggtggtg |
420 |
T |
|
| Q |
164 |
gt |
165 |
Q |
| |
|
|| |
|
|
| T |
421 |
gt |
422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 8962 - 8897
Alignment:
| Q |
67 |
gtttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtt |
132 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||| |||||| || || | ||||||||||||||| |
|
|
| T |
8962 |
gtttgtcactttctattttactaattttccgtcgtacttatcaaacttctgtttacgaaaagggtt |
8897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 9140707 - 9140631
Alignment:
| Q |
68 |
tttgtcacgttttattttactaattttccaccgttcttatcgaatttttatttacgaaaagggtttgaggtttgtgg |
144 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||| ||||||| | | || |||||||||||||| ||||| |
|
|
| T |
9140707 |
tttgttacgttctattttaccaattttccgccttttttatccaatttttctctgcgtaaagggtttgaggtctgtgg |
9140631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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