View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6790_low_6 (Length: 516)
Name: NF6790_low_6
Description: NF6790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6790_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 24 - 501
Target Start/End: Complemental strand, 4264242 - 4263760
Alignment:
| Q |
24 |
gtgtacacttttgcatgcacaaatgaatgaattcataaaccatttctgggttttgcagattttccttcatggaagaagcttccacagtctactcttccat |
123 |
Q |
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| T |
4264242 |
gtgtacacttttgcatgcacaaatgaatgaattcataagccatttctgggttttgcagattttcctttatggaagaagcttccacagtctactcttccat |
4264143 |
T |
|
| Q |
124 |
tagtagctgatttcattataaaaaatggggttatatacacaagtgacgagtctctcccatttgcaaactccatggcagttgctaatggaagggttattcg |
223 |
Q |
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| T |
4264142 |
tagtatctgatttcattataaaaaatggggttatatacacaagtgatgagtctctcccatttgcaaactccatggcagttgctaatggaagggttattcg |
4264043 |
T |
|
| Q |
224 |
tattggaaacttctcttttgtccaggttcatttca-----tttctctgtttcttctgtattaatattgcnnnnnnnnnaatatatatgatttcaatgtga |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
4264042 |
tattggaaacttctcttttgtccaggttcatttcatttcatttctctgtttcttctatattaatattgcttatttttgaatatatatgatttcaatgtga |
4263943 |
T |
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| Q |
319 |
ttttgaggttcaatttccacttacccggaagttatttttcaattgattgattattgagttagttgttactacctttggtaggaattagttagtagttgac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4263942 |
ttttgaggttcaatttccacttacccggaagttatttttcaattgattgattattgagttagttgttactacctttggtaggaattagttagtagttgac |
4263843 |
T |
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| Q |
419 |
tatgatgcacagacactcctagaatcctcatattaggcgtgtcctgttgtcaggcacgttatgattccattgaattatgtgat |
501 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4263842 |
tatgatgcacggacactcctagaatcctcagattaggcgtgtcctgttgtcaggcacgttatgattccattgaattatgtgat |
4263760 |
T |
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